GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002376-TA|BGIBMGA002376-PA|IPR001753|Enoyl-CoA
hydratase/isomerase
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...   213   3e-56
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    29   0.74 
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    28   1.7  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    28   2.3  
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch...    27   3.9  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    27   3.9  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    27   3.9  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    27   5.2  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    27   5.2  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   6.9  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    26   9.1  
SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo...    26   9.1  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score =  213 bits (520), Expect = 3e-56
 Identities = 129/356 (36%), Positives = 200/356 (56%), Gaps = 23/356 (6%)

Query: 2   SSQEPDVLFEALNNAGIVTLNRPKALNSLNTSMVSKLLPQLQEWEKSK--SLVIIKGAGE 59
           +S    VL+E+ N A I TLNRPK LN++N  M+  +LP+L   E+S    ++I+KG G 
Sbjct: 52  TSSNDTVLYESKNGARIFTLNRPKVLNAINVDMIDSILPKLVSLEESNLAKVIILKGNG- 110

Query: 60  KAFCAGGDVKAAIDKMEGPRF------FHTEYNVNYLIGNYKIPYIAFINGITMGGGLGL 113
           ++F +GGD+KAA   ++  +       F  EY +++ +  Y+ P +A +NGITMGGG GL
Sbjct: 111 RSFSSGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTLATYQKPVVALMNGITMGGGSGL 170

Query: 114 SVHGRYRVATEKTLIAMPETKIGLFPDVGGSFFLPRLQVNLGLYLGLTGDRLKGKDVVKA 173
           ++H  +R+A E T+ AMPET IG F DV  SFF  RL    G YLGLT   +KG D ++ 
Sbjct: 171 AMHVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLPGYFGTYLGLTSQIVKGYDCLRT 230

Query: 174 GIATHFVPSKRLYELEMLLSRC-ANDI-EVNSLLNKFHE--PSEDFSLASNIKH-INYCF 228
           GIATHFVP      LE  L+    +DI ++N+ + +F E   S   +   ++   IN CF
Sbjct: 231 GIATHFVPKHMFPHLEDRLAELNTSDISKINNTILEFAEFASSSPPTFTPDVMDVINKCF 290

Query: 229 AASTVEEIIERLEKVQN------EWSVKTLETLHQMCPGSLKITLRALQRGAQLDLGQCL 282
             +   +II  L++  +      E++  T++TL+   P S+ +T R ++  A+  + +  
Sbjct: 291 CKNDTVDIIRALKEYASNTSALAEFAKSTVKTLYSKSPTSIAVTNRLIKSAAKWSISEAF 350

Query: 283 QMEYRLACRATENHDFPEGVRALLIDKDNKPQWNPKSLAEADDEYVESYFKRLPED 338
             ++ ++    +  DF EGV A LI K   P+W+        D  +E+YFK LP +
Sbjct: 351 YYDHIVSYYMLKQPDFVEGVNAQLITKTKNPKWSKSHEYHFKD--LENYFK-LPSE 403


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 11/27 (40%), Positives = 19/27 (70%)

Query: 191 LLSRCANDIEVNSLLNKFHEPSEDFSL 217
           LL RCA D+E +++L+K +E  +D  +
Sbjct: 600 LLQRCAEDLEYSNMLDKANECDDDIKI 626


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 123 TEKTLIAMPETKIGLFPDVGGSFF-LPRLQVNLGLYLGLTGDRLKGKDVVKAGIATHFVP 181
           T  +LI +P  +   F    GSF  L  +    G Y    G+     + +   + T+   
Sbjct: 286 TPTSLIPIP-LRESAFQQKKGSFLVLGNVVATKGSYNTFQGEAESAINNLNELLGTYGYS 344

Query: 182 SKRLYELEMLLSRCANDIEVNSLLNKFHE 210
           +K +Y + ++LS  +   E NS+ NK+ +
Sbjct: 345 NKNVYFVTVILSSMSKFAEFNSVYNKYFD 373


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 180 VPSKRLYE-LEMLLSRCANDIEVNSLLNKFHEPSEDFSLASNIKHINYCFAASTV--EEI 236
           V S+R  E LE LLS      + NSL+    E    F     I+ +   F  +T+  EE+
Sbjct: 23  VESQRTDEKLERLLSDAQPTEKFNSLIKNMAERLVLF--VGQIEELKDAFCNTTIVSEEV 80

Query: 237 IERLEKVQNE 246
           IER++ V  E
Sbjct: 81  IERIKSVDRE 90


>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 437

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 218 ASNIKHINYCFAASTVEEIIERLEKVQNEWSVKTLETL 255
           + ++K  N   A ++   I+E+ E  QNEW+ K L+ +
Sbjct: 38  SKSLKEENPESALTSFYSIVEKCEGEQNEWAFKALKQI 75


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 29  SLNTSMVSKLLPQLQEWEKSKSLV 52
           +L++S +S+L PQL+EW  SK  V
Sbjct: 703 ALSSSPLSELHPQLREWFSSKQSV 726


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 96  IPYIAFINGITMGGGLGLSVHGRY-RVATEKTLIAMPETKIGLFPDVG 142
           +P IA   G+ +GG   +  + RY ++ T      +PE ++ L   VG
Sbjct: 328 LPMIAMFTGVVIGGSFNIMWNQRYAKLITANGGKPLPEQRLPLMMAVG 375


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 9/62 (14%)

Query: 183 KRLYELEMLLSRCANDIEVNSLLNKFHEPSEDFSLASNIKHINYCFAASTVEEIIERLEK 242
           +RL + E LL    ++I++N +    H P  D +L  + + +     +ST+E+IIER+ +
Sbjct: 31  RRLTDTERLLRYLHSEIDLNGI----HVP--DHNLPPSYESV---LESSTIEDIIERITR 81

Query: 243 VQ 244
           ++
Sbjct: 82  LE 83


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 245 NEWSVKTLETLHQMCPGSLKITLRALQRGAQLDLGQC 281
           NEWS+KT   LH      L   L+ L++G +L    C
Sbjct: 257 NEWSLKTALGLHATQIKILMRGLQLLEKGGRLVYSTC 293


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 184 RLYELEMLLSRCANDIEVNSLLNKFHEPSEDFSLASN 220
           RLY+ E L    A+ +  N L + F  P E + + SN
Sbjct: 199 RLYQWEQLFDSKAHVVSENELADYFCLPEESYVMYSN 235


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 213 EDFSLASNIKHINYCFAASTVEEIIERLEKVQN 245
           ED  +A N     +C    T+EE   RL+K+++
Sbjct: 387 EDAPVAENYLRFAFCKTFETLEEAARRLQKLKD 419


>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 10/36 (27%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 223 HINYCFAASTVEEIIERLEKVQNEWSVKTLETLHQM 258
           H+N     S+++ I+++L+   N + +KT++  H+M
Sbjct: 34  HLNQFIVHSSLD-IVDQLQWTSNAFYMKTIDQFHEM 68


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.137    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,591,207
Number of Sequences: 5004
Number of extensions: 65807
Number of successful extensions: 198
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 186
Number of HSP's gapped (non-prelim): 13
length of query: 348
length of database: 2,362,478
effective HSP length: 73
effective length of query: 275
effective length of database: 1,997,186
effective search space: 549226150
effective search space used: 549226150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)