Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002375-TA|BGIBMGA002375-PA|IPR011046|WD40-like,
IPR001680|WD-40 repeat
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 144 4e-35
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 44 7e-05
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 43 1e-04
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 37 0.010
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 36 0.018
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 35 0.032
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 35 0.032
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 35 0.042
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 35 0.042
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 32 0.23
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 31 0.39
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 31 0.52
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 31 0.69
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 30 1.2
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 30 1.2
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 29 1.6
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 29 2.1
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 29 2.1
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 29 2.1
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 29 2.8
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 29 2.8
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 28 3.7
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 28 4.8
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 28 4.8
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 28 4.8
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 27 6.4
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 27 6.4
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 27 6.4
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 27 8.5
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 27 8.5
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 27 8.5
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 27 8.5
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 144 bits (349), Expect = 4e-35
Identities = 103/404 (25%), Positives = 182/404 (45%), Gaps = 34/404 (8%)
Query: 247 FMSRAGRVIERALAE-SVDIXXXXXXXXXXENALDDKSAARLSLVRTFEEERWSRGRCVT 305
F+ + ++++RAL + S + + L+ + TF++E+ + V
Sbjct: 137 FLHSSAKILDRALCDQSNQLFTDYTVKKKSKKNKSQLEENGLNHLFTFQDEKITLNSVVN 196
Query: 306 CLDWSTFHPELVLASYYNSDDAPHDPDGVCLVWNTKFKKTTPEDIFHCQSAVMSATFARF 365
+ +S+F EL++ SY +A G+ +VWN ++K + PE + +S + + F
Sbjct: 197 SISYSSFFEELLITSYAKPKEALRTR-GLAIVWNQRWKNS-PESVLKARSEITVCKPSPF 254
Query: 366 HPNLILGGTYSGQIVLWDNRVQKRTPVQRTPLSSVAHTHPVYCLSVIGSQNAHNLISVST 425
HP LI GG Y+GQ+ LWD R Q + PV T + S H PV ++ I + ++N+++ ST
Sbjct: 255 HPQLIAGGAYNGQVFLWDLR-QGQYPVSFTTIISGGHLEPVTDITYINNPPSNNIVTCST 313
Query: 426 DGRLCSWSLDMLSQPQETLELQHR---QAKPVAVTCMDCPQTMLNNFVLGSEDGNVYTGC 482
DG + W DM S+P ET+ L + ++ + TC+ F++G+EDG + G
Sbjct: 314 DGLVHIWEPDMFSRPSETICLSSQVDSSSQCIPATCLSFIPENNMEFLVGAEDGKLQRGY 373
Query: 483 L--YGQRAGV---TECVEAHAGPLTGVSCHAA-AGPVDL---AHLYLTCSVDWSVKLWSL 533
Y + V E H ++G+ + + V L LT S DW+V+LW
Sbjct: 374 RSDYSETKAVQPSNVSYEGHNVFISGIDVMTSNSQNVFLEKNKDFALTSSFDWTVRLWQC 433
Query: 534 KESKPLYSFEDNGD-----------------YLVDVRWSPXXXXXXXXXXXXSRLDLWNL 576
S+ + + D + DV+W L+LW+L
Sbjct: 434 SPSRNQHELVPSNDLDEQVIINSCKTFTHKAMVFDVKWCVSEPCCFASVDALGNLNLWDL 493
Query: 577 NRDTEVPIASVQAEGGAAFSRVSWSPAGSLVTAGDDRGKISVYE 620
+D E P+ S G ++++W P + G G + +Y+
Sbjct: 494 QKDVEAPVTS-DIPDGKPLNKIAWQPEKRNLACGGLNGNVHIYK 536
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 44.0 bits (99), Expect = 7e-05
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 520 LTCSVDWSVKLWSLKESKPLYSFEDNGDYLVDVRWSPXXXXXXXXXXXXSRLDLWNLNRD 579
LT S D +KLW KES +F N + DV +SP L W++ R
Sbjct: 151 LTASQDGLIKLWDYKESSSTITFRGNSEAARDVVFSPSEPNEFVAAYDSGILQKWDI-RF 209
Query: 580 TEVPIASVQAEGGAAFSRVSWSPAG-SLVTAGDDR 613
++P + A G V++SP G L + G D+
Sbjct: 210 PKLPFLKLAAHNGVVLC-VNYSPNGVFLASCGRDK 243
Score = 33.9 bits (74), Expect = 0.074
Identities = 41/144 (28%), Positives = 59/144 (40%), Gaps = 21/144 (14%)
Query: 302 RCVTCLDWSTFHPELVLASYYNSDDAPHDPDGVCLVWNTKFKKTTPEDIFHCQS-AVMSA 360
R V LD S+FHP VL + DG+ +W+ +K+++ F S A
Sbjct: 135 RAVHKLDISSFHPSYVLTA---------SQDGLIKLWD--YKESSSTITFRGNSEAARDV 183
Query: 361 TFARFHPNLILGGTYSGQIVLWDNRVQKRTPVQRTPLSSVAHTHPVYCLSVIGSQNAHNL 420
F+ PN + SG + WD R K P L AH V C++ S N L
Sbjct: 184 VFSPSEPNEFVAAYDSGILQKWDIRFPK-LPF----LKLAAHNGVVLCVNY--SPNGVFL 236
Query: 421 ISVSTDGRLCSWSLDMLSQPQETL 444
S D + W D S +++L
Sbjct: 237 ASCGRDKTIRIW--DSTSNKKKSL 258
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 331 PDGVCLVWNTKFKKTTPEDIFHCQSAVMSATFARFHPNLILGGTYSGQIVLWDNRVQKRT 390
P G VW+ + + H + AV + FHP+ +L + G I LWD + T
Sbjct: 112 PLGNLNVWDVNLEALLYDFNEHSR-AVHKLDISSFHPSYVLTASQDGLIKLWDYKESSST 170
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 43.2 bits (97), Expect = 1e-04
Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 17/229 (7%)
Query: 373 GTYSGQIVLWDNR-VQKRTPVQRTPLSS----VAHTHPVYCLSVIGS-QNAHNLISVSTD 426
G Y ++++D + + +PL HT P C SV + + L+S S D
Sbjct: 149 GNYHNDVLVFDKESFESYSSASESPLKPKYRLTKHTQP--CTSVCWNFLSKGTLVSGSQD 206
Query: 427 GRLCSWSLDMLSQPQETLELQ-HRQAKPVAVTCMDCPQTMLNNFVLGSEDGNVYTGCLYG 485
L W L+ ++ L+ H + V+ + + S D ++ +
Sbjct: 207 ATLSCWDLNAYNESDSASVLKVHISSHEKQVSDVRFHYKHQDLLASVSYDQYLHVHDIRR 266
Query: 486 QRAGV--TECVEAHAGPLTGVSCHAAAGPVDLAHLYLTCSVDWSVKLWSLKE-SKPLYSF 542
A V AH+GP+ H+ A + TCS D ++ LW L+ ++ L++
Sbjct: 267 PDASTKPARSVHAHSGPI-----HSVAFNPHNDFILATCSTDKTIALWDLRNLNQRLHTL 321
Query: 543 EDNGDYLVDVRWSPXXXXXXXXXXXXSRLDLWNLNRDTEVPIASVQAEG 591
E + D + + +SP R +W+L+R E A +G
Sbjct: 322 EGHEDIVTKISFSPHEEPILASTSADRRTLVWDLSRIGEDQPAEEAQDG 370
Score = 31.9 bits (69), Expect = 0.30
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 354 QSAVMSATFARFHPNLILGGTYSGQIVLWDNRVQKRTPVQRTPLSSV-AHTHPVYCLSVI 412
+ V F H +L+ +Y + + D R R P SV AH+ P++ ++
Sbjct: 234 EKQVSDVRFHYKHQDLLASVSYDQYLHVHDIR---RPDASTKPARSVHAHSGPIHSVA-F 289
Query: 413 GSQNAHNLISVSTDGRLCSWSLDMLSQPQETLE 445
N L + STD + W L L+Q TLE
Sbjct: 290 NPHNDFILATCSTDKTIALWDLRNLNQRLHTLE 322
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 36.7 bits (81), Expect = 0.010
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 370 ILGGTYSGQIVLWDNRVQKRTPVQRTPLSSVAHTHPVYCLSVIGSQNAHNLISVSTDGRL 429
+L G +G I+L+ R Q+ PV T L HT PV CL++ GS+ ++S S D +
Sbjct: 203 VLSGVNNGDIILYSTRHQEGYPV--TSLKK--HTAPVSCLALHGSEK--KVLSGSWDKMV 256
Query: 430 CSWSLD 435
W L+
Sbjct: 257 YYWDLN 262
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 35.9 bits (79), Expect = 0.018
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 494 VEAHAGPLTGVSCHAAAGPVDLAHLYLTCSVDWSVKLWSLKES-KPLYSFEDNGDYLVDV 552
++AH+ + V A P + +L T S D +V LW L+ + L++ E + D + +
Sbjct: 277 IQAHSKAINAV----AINPFN-DYLLATASADKTVALWDLRNPYQRLHTLEGHEDEVYGL 331
Query: 553 RWSPXXXXXXXXXXXXSRLDLWNLNR 578
WSP R+ +W+L +
Sbjct: 332 EWSPHDEPILASSSTDRRVCIWDLEK 357
Score = 31.5 bits (68), Expect = 0.39
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 343 KKTTPEDIFHCQSAVMSATFARFHPNLILGGTYSGQIVLWDNRVQKRTPVQRTPLSSVAH 402
++ P+ I A+ + F+ L+ + + LWD R P QR H
Sbjct: 270 EEEAPKVIQAHSKAINAVAINPFNDYLLATASADKTVALWD----LRNPYQRLHTLE-GH 324
Query: 403 THPVYCLSVIGSQNAHNLISVSTDGRLCSWSLDMLSQPQ 441
VY L + L S STD R+C W L+ + + Q
Sbjct: 325 EDEVYGLEW-SPHDEPILASSSTDRRVCIWDLEKIGEEQ 362
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 35.1 bits (77), Expect = 0.032
Identities = 54/201 (26%), Positives = 83/201 (41%), Gaps = 22/201 (10%)
Query: 339 NTKFKKTTP-EDIFHCQSAVMSATFARFHPNLILGGTYSGQIVLWDNRVQKRTPVQRTPL 397
N K KK+ D +H AV++ + R NL++ G+ + LWD
Sbjct: 239 NKKKKKSKKINDSYHTD-AVLALSSNRNAHNLLVSGSADTTLKLWD------LSTCNCVK 291
Query: 398 SSVAHTHPVYCLSVIGSQNAHNLISVSTDGRLCSWSLDMLSQPQETLELQHRQAKPVAVT 457
S H+ V CL S+ L+S S D L + P + V
Sbjct: 292 SFTYHSDKVSCLDWY-SKAPSVLLSGSYDKTAKIADLRLEEAPSS-----FQVTSDVENV 345
Query: 458 CMDCPQTMLNNFVLGSEDGNVYTGCLYGQRAGVTECVEAHAGPLTGVSCHAAAGPVDLAH 517
D Q NNF +G+++G VY V + ++AH GP++ +S + + P +A
Sbjct: 346 AWD--QHSENNFFIGTDNGIVYYCDARNLSKSVWQ-LQAHDGPISCLSVNPSV-PSFVA- 400
Query: 518 LYLTCSVDWSVKLWSLKESKP 538
T S D VKLW+ +S P
Sbjct: 401 ---TGSTDRVVKLWNTSDSSP 418
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 35.1 bits (77), Expect = 0.032
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 332 DGVCLVWNTKFKKTTPEDIFHCQSAV--MSATFARFHPNLILGGTYSGQIVLWDNRVQKR 389
DG +W+ + K+ T + V ++ PNL+ G +G +WD R K
Sbjct: 313 DGTFRIWDVRNKQKTSALTVNAHPGVDVNVLSWNTRVPNLLATGADNGVWSVWDLRSLKS 372
Query: 390 TPVQRTPLSSVA-HTHPVYCLSVIGSQNAHNLIS-VSTDGRLCSWSLDMLSQPQE 442
+ TP++S H P+Y S+ N ++I V D ++ W L + +E
Sbjct: 373 SSSVATPVASFKWHRAPIY--SIEWHPNEDSVIGVVGADNQISLWDLSVELDEEE 425
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 551 DVRWSPXXXXXXXXXXXXSRLDLWNLNRDTEVPIASVQAEGGAAFSRVSWSP-AGSLVTA 609
D++WSP +W++ + +V A G + +SW+ +L+
Sbjct: 296 DLQWSPSEKNVFSSCSCDGTFRIWDVRNKQKTSALTVNAHPGVDVNVLSWNTRVPNLLAT 355
Query: 610 GDDRGKISVYEL 621
G D G SV++L
Sbjct: 356 GADNGVWSVWDL 367
Score = 27.5 bits (58), Expect = 6.4
Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 10/124 (8%)
Query: 517 HLYLTCSVDWSVKLWSLKESKPLYSFEDNGDYLVDVR---WS---PXXXXXXXXXXXXSR 570
+++ +CS D + ++W ++ + + N VDV W+ P S
Sbjct: 305 NVFSSCSCDGTFRIWDVRNKQKTSALTVNAHPGVDVNVLSWNTRVPNLLATGADNGVWSV 364
Query: 571 LDLWNLNRDTEV--PIASVQAEGGAAFSRVSWSP-AGSLVTAGDDRGKISVYELAEQVWS 627
DL +L + V P+AS + +S + W P S++ +IS+++L+ ++
Sbjct: 365 WDLRSLKSSSSVATPVASFKWHRAPIYS-IEWHPNEDSVIGVVGADNQISLWDLSVELDE 423
Query: 628 PRHD 631
D
Sbjct: 424 EEQD 427
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 34.7 bits (76), Expect = 0.042
Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 15/163 (9%)
Query: 472 GSEDGNVYTGCLYGQRAGVTECVEAHAGPLTGVSCHAAAGPVDLAHLYLTCSVDWSVKLW 531
GS D ++T G A V + +G + G S AAGP LA T D VK+W
Sbjct: 134 GSCDTRIFTAHEPGCNA-VCWSPPSLSGSVVGQS--PAAGPKKLA----TAGCDNLVKIW 186
Query: 532 SLKESKPLYSFED----NGDYLVDVRWSPXXXXXXXXXXXXSR---LDLWNLNRDTEVPI 584
+ + ED + D+ DV W+P S+ + +W D
Sbjct: 187 AFDAGVNNWILEDTLAGHVDWTRDVAWAPSVGLTKTYLASASQDKNVFIWTKEGDGPWQK 246
Query: 585 ASVQAEGGAAFS-RVSWSPAGSLVTAGDDRGKISVYELAEQVW 626
+ E + RVSWS +G+++ K+ +++ ++ W
Sbjct: 247 TPLTEEKFPDIAWRVSWSLSGNILAVSCGDNKVYLFKESQNKW 289
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 34.7 bits (76), Expect = 0.042
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 25/163 (15%)
Query: 377 GQIVLWDNRVQKRTPVQRTPLSSVAHTHPVYCLSVIGSQNAHNLISVSTDGRLCSWSLDM 436
G + +WD R VQR + H PV L + +Q L+S GR+ +W L
Sbjct: 105 GTVKVWDMRAPS---VQR----NYDHKSPVNDLLIHPNQG--ELLSCDQSGRVRAWDL-- 153
Query: 437 LSQPQETLELQHRQAKPVAVTCMDCPQTMLNNFVLGSEDGNVYTG-CLYGQRAGVTECV- 494
+ T EL + P++ + +ML + G+ GN Y L Q A + + V
Sbjct: 154 -GENSCTHELIPEEDVPMSSITVGSDGSML---IAGNNKGNCYVWRMLNHQGASLLQPVV 209
Query: 495 --EAHAGPLTGVSCHAAAGPVDLAHLYLTCSVDWSVKLWSLKE 535
+AH +T P D+ HL TCS D +V +WS ++
Sbjct: 210 KFQAHQRYIT----RCVLSP-DVKHL-ATCSADATVNIWSTED 246
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 32.3 bits (70), Expect = 0.23
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 346 TPEDIFHCQ-SAVMSATFARFHPNLILGGTYSGQIVLWDNRVQK---RTPVQRTPLSSVA 401
TP FH S V + H NL + +G + DNR+Q+ +T PL SV
Sbjct: 223 TPVKDFHYDDSPVNDVEYHPHHTNLYIAVNDNGIAFICDNRLQQTCSKTVKASNPLFSVR 282
Query: 402 HTHPVYCLSVIGSQ 415
H + L +GS+
Sbjct: 283 HNPSIATLFALGSE 296
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 31.5 bits (68), Expect = 0.39
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 520 LTCSVDWSVKLWSLKESKPLYSFEDNGD 547
LT S D ++KLWSL+ K L+SF + D
Sbjct: 232 LTASSDATIKLWSLRAQKCLFSFIAHSD 259
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 31.1 bits (67), Expect = 0.52
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 525 DWSVKLWSLKESKPLYSFEDNGDYLVDVRWSPXXXXXXXXXXXXS--RLDLWNLNR 578
D ++ +W E KPLYSF ++ + + WSP + + LWN R
Sbjct: 395 DNALMVWDKFEEKPLYSFHNHIAAVKAITWSPHQRGILASGGGTADRTIKLWNTQR 450
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 30.7 bits (66), Expect = 0.69
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 521 TCSVDWSVKLWSLKESK-PLYSFEDNGDYLVDVRWS 555
TCS+D SV W L+ + P+ SF D + V+W+
Sbjct: 340 TCSIDSSVHCWDLRSPRFPVNSFYDWHNGATQVKWN 375
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 483 LYGQRAG-VTECVEAHAGPLTGVSCHAAAGPVDLAHLYLTCSVDWSVKLWSLKESKPLYS 541
L+ R G + + + H GP+ G++ H L+++ D+ V +W+ K K L+S
Sbjct: 37 LWDYRMGTLLDRFDGHDGPVRGIAFHPTQP------LFVSGGDDYKVNVWNYKSRKLLFS 90
Query: 542 FEDNGDYL 549
+ DY+
Sbjct: 91 LCGHMDYV 98
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 29.9 bits (64), Expect = 1.2
Identities = 47/204 (23%), Positives = 77/204 (37%), Gaps = 15/204 (7%)
Query: 408 CLSVIGSQNAH-NLISVSTDGRLCSWSLDMLSQPQETLELQHRQAKPVAVTCMDCPQTML 466
CL ++ A N +S+ST+ L S + D ++ + R+AK C+ L
Sbjct: 302 CLHILKGHAARVNHLSLSTEHVLRSGAYDHTDFKPKSFSDERRKAKERYEACLKQSGERL 361
Query: 467 NNFVLGSEDGNVYTGCLYGQRAGVTECVEAHAGPLTGVSCHAAAGPVDLAHLYLTCSVDW 526
V S+D + L+ + + H V HA+ P T S D
Sbjct: 362 ---VSASDDLQLI---LWDPQKSTKPITKMHGHQK--VVNHASFSPD--GRCIATASFDS 411
Query: 527 SVKLWSLKESKPLYSFEDNGDYLVDVRWSPXXXXXXXXXXXXSRLDLWNLNRDTEVPIAS 586
SV+LW K K L + + + WS + L +W++ R ++
Sbjct: 412 SVRLWDGKTGKFLATLRGHVAAVYQCAWS-TDSRLLVSSSQDTTLKVWDV-RSKKMKF-D 468
Query: 587 VQAEGGAAFSRVSWSPAGSLVTAG 610
+ F+ V WSP G V +G
Sbjct: 469 LPGHEDQVFA-VDWSPDGQRVASG 491
Score = 27.9 bits (59), Expect = 4.8
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 464 TMLNNFVLGSEDGN--VYTGCLYGQRAGVTECVEAHAGPLTGVSCHAAAGPVDLAHLYLT 521
++ +N ++ +ED +YT + VT C + G G A P + L +T
Sbjct: 95 SVFHNGLMKTEDHLTLLYTPQAVFRVRAVTRCTASMNGH-DGTIISAQFSPSTSSRL-VT 152
Query: 522 CSVDWSVKLWSLKESKPLYSFEDNGDYLVDVRWSP 556
S D++ +LW P+ + + + +++ V W+P
Sbjct: 153 GSGDFTARLWDCDTQTPIATMKGHTNWVSCVAWAP 187
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 29.5 bits (63), Expect = 1.6
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 412 IGSQNAHNLISVSTDGRLCSWSLDMLSQPQETLELQHRQAKPVAVTCMDCPQTMLNNFVL 471
+ S H +I S D RLC + LD S+P + L R + V+ L F
Sbjct: 618 VHSSGDHVIIG-SYDKRLCWFDLDFSSKPYKNLRYHSRALRDVSY------HPSLPLFCS 670
Query: 472 GSEDGNV 478
GS+DG+V
Sbjct: 671 GSDDGDV 677
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 368 NLILGGTYSGQIVLWDNRVQKRTPVQRTPLSSVAHTHPVYCLSV-IGSQNAHNLISVSTD 426
N+I+ G G + ++D KR P R L+ V H ++V + S LIS S+D
Sbjct: 1146 NIIVAGFSDGVLRVYD----KRLPA-RDSLTDVWKEHSSEIVNVEMQSSGMRELISASSD 1200
Query: 427 GRLCSWSLDM 436
G + W + M
Sbjct: 1201 GEVKLWDIRM 1210
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 312 FHPELVLASYYNSDDAPHDPDGVCLVWNTK 341
FH +L +YY D A +PD VCLV NT+
Sbjct: 217 FHGDLN-ETYYVGDKAKANPDLVCLVENTR 245
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 29.1 bits (62), Expect = 2.1
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 356 AVMSATFARFHPNLILGGTYSGQIVLWDNRVQKRTPVQRTPLSSVAHTHPVYCLSVIGSQ 415
+V+ F R NL++ G+ I++WD Q R P++ V H L V+ S+
Sbjct: 263 SVLCLDFCR-RRNLLVSGSSDSTIIIWD--WQNRRPLK------VYFGHTDNVLGVVVSE 313
Query: 416 NAHNLISVSTDGRLCSWSLDMLSQPQETLEL 446
N +IS S D W LD S + + +
Sbjct: 314 N--YIISSSRDHTARVWRLDATSPAEACMHV 342
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 525 DWSVKLWSLKESKPLYSFEDNGDYLVDVRWSP 556
D ++ +W + S+PL+ FE++ + + WSP
Sbjct: 270 DNNLFVWDYRSSRPLHKFEEHTAAVKAIGWSP 301
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 496 AHAGPLTGVSCHAAAGPVDLAHLYLTCSVDWSVKLWSLKESKPLYSFEDNGDYLVDVRWS 555
+H+GP+ G + D +L L+CS D S +LWS+ L +++ + + DV +
Sbjct: 377 SHSGPVYGTTFSP-----DNKYL-LSCSEDASARLWSVDTKTALVAYKGHTGPVWDVAFG 430
Query: 556 P 556
P
Sbjct: 431 P 431
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 585 ASVQAEGGAAFSRVSWSPAGSLVTAGDDRGKISVYELAEQ 624
AS+Q + S +SWSP+G L+ KI+V+ L Q
Sbjct: 94 ASIQCDQDP-LSSISWSPSGELLLWSSFDSKITVWSLNTQ 132
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.9 bits (59), Expect = 4.8
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 467 NNFVLGSEDGNVYTGCLYGQRAGVTECVEAHAGPLTGVSCHAAAGPVDLAHLYLTCSVDW 526
NNF+L S T L+ C H+ +T ++ H P D +L+ S+D
Sbjct: 320 NNFLLSSSMDK--TARLWHPVRKDCLCCFEHSDFVTSIAFH----PKD-DRFFLSGSLDC 372
Query: 527 SVKLWSLKESKPLYSFEDNGDYLVDVRWSP 556
++LWS+KE K + + + + + V +SP
Sbjct: 373 KLRLWSIKE-KAVSFWNELPELITAVAFSP 401
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.9 bits (59), Expect = 4.8
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 519 YLTCSVDWSVKLWSLKESKPL 539
+LT S+D +++LW+L +KP+
Sbjct: 2310 FLTASLDLTLRLWTLSTNKPI 2330
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 27.9 bits (59), Expect = 4.8
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 487 RAGVTECVEAHAGPLTG-VSCHAAAGPVDLAHLYLTCSVDWSVKLWSLKESKPLYSF 542
R+G T ++A AG + G V C A +D H ++T S + + LWS++ KPL+++
Sbjct: 330 RSGGTS-MKATAGYMEGSVDCVAM---IDEDH-FVTGSDNGVIALWSVQRKKPLFTY 381
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 27.5 bits (58), Expect = 6.4
Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Query: 332 DGVCLVWNTKFKKTTPEDIFHCQSAVMSATFARFHPNLILGGTYSGQIVLWDNRVQKRTP 391
+G +WN K K + FH + ++ + L++GG+ +G I V +RT
Sbjct: 222 NGFVEIWNRKTKNNRCDYKFHHDGDISCMAWSPINWTLLVGGS-TGNIY-----VYRRTK 275
Query: 392 VQRTPLSSVAHTHPVYCLSVIGSQNAHNLISVSTDGRLCSWSLDML 437
+ ++ H + + + S D +C + +D L
Sbjct: 276 SMMRRVHTIKKVHQEQVCGLEWNYDGTQFASGGNDNLVCIFDIDSL 321
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 27.5 bits (58), Expect = 6.4
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 8/120 (6%)
Query: 98 LQLQGGPKKQPQELQVVFVQSTD--IPPKEXXXXXXXXXXXXXXXXELRDAHATDYYDEY 155
++L+ P + ++ F T +PPK +L D A +
Sbjct: 291 IKLEHSDNNSPSKPEIPFRHPTSKPLPPKPLSRSKSSSLSRNQTRSQLNDLSA----END 346
Query: 156 NLNPGLEWEDEFTVLTFDGDVARQGDDEEAAFHGKLPPGILPHGLPTVKEVQPAVTDAPV 215
+ + E++D+ + +A +GDD+E A PP + P E +T+A V
Sbjct: 347 STSNSTEYDDQLQSIL--RSLAIEGDDDEVAKVLPKPPSVPTIQAPIPPEAPRNLTNASV 404
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 153 DEYNLNPGLEWEDEFTVLTFDG 174
DE + NP L+WED FT +TF G
Sbjct: 757 DEDSSNP-LKWEDAFTDMTFLG 777
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 519 YLTCSVDWSVKLWSLKES 536
+ T S D +VKLWSLK S
Sbjct: 492 FATASADHTVKLWSLKSS 509
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 518 LYLTCSVDWSVKLWSLKESKPLYSFEDNGDYLVDVRWSP 556
L +TCS D +VK+W L S + D +++V + P
Sbjct: 590 LLVTCSADKNVKIWGLDFGDCHKSIFAHQDSIMEVTFQP 628
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/64 (25%), Positives = 28/64 (43%)
Query: 493 CVEAHAGPLTGVSCHAAAGPVDLAHLYLTCSVDWSVKLWSLKESKPLYSFEDNGDYLVDV 552
C+++HA +T + P +T S D SV W +K L SF+ ++ +
Sbjct: 212 CLDSHADSVTCIDALTGDLPPTGEIGMVTGSDDGSVHCWDVKTGVSLQSFQFRSSQILSL 271
Query: 553 RWSP 556
+ P
Sbjct: 272 CFRP 275
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 27.1 bits (57), Expect = 8.5
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 332 DGVCLVWNTKFKKTTPEDIFHCQSAVMSATFARFHPNLILGGTYSGQIVLWDNRVQKRTP 391
DG+ +W+ + I H +A +S+ +F N + G+Y + +WD ++ +P
Sbjct: 515 DGLIRIWDLRIGLPVRSFIGH--TAPISSL--QFDSNHLYSGSYDNSVRIWD--LRSGSP 568
Query: 392 VQRTPLSSVAHTHPVY--CLSVIGSQ-NAHNLISVSTDGRLCS 431
+ P+ ++ +Y L+V + N +VS +CS
Sbjct: 569 INIIPMEKKVNSLRLYQGRLAVASDEPNVRIFDTVSNRNWICS 611
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 577 NRDTEVPIASVQAEGGAAFSRVSWSPAGSLVTAGDDRGKISVYELAEQ 624
N D+ A + + + V WS GS ++ G G + +Y++ Q
Sbjct: 206 NADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 253
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.131 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,507
Number of Sequences: 5004
Number of extensions: 106907
Number of successful extensions: 295
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 67
length of query: 672
length of database: 2,362,478
effective HSP length: 77
effective length of query: 595
effective length of database: 1,977,170
effective search space: 1176416150
effective search space used: 1176416150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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