Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002375-TA|BGIBMGA002375-PA|IPR011046|WD40-like,
IPR001680|WD-40 repeat
(672 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.) 503 e-142
SB_10356| Best HMM Match : WD40 (HMM E-Value=6e-10) 72 2e-12
SB_51892| Best HMM Match : WD40 (HMM E-Value=8.7e-14) 54 5e-07
SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 1e-04
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 0.001
SB_20145| Best HMM Match : WD40 (HMM E-Value=2.4e-09) 39 0.011
SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.015
SB_51692| Best HMM Match : WD40 (HMM E-Value=0.24) 38 0.020
SB_8639| Best HMM Match : WD40 (HMM E-Value=1.9e-22) 38 0.026
SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.026
SB_44767| Best HMM Match : WD40 (HMM E-Value=0.074) 37 0.046
SB_3361| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.046
SB_53276| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.060
SB_8844| Best HMM Match : WD40 (HMM E-Value=2.5e-28) 35 0.24
SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18) 35 0.24
SB_39216| Best HMM Match : WD40 (HMM E-Value=1.1e-14) 33 0.74
SB_5414| Best HMM Match : WD40 (HMM E-Value=6.6e-15) 33 0.74
SB_59771| Best HMM Match : WD40 (HMM E-Value=3.9e-09) 33 0.98
SB_42442| Best HMM Match : Keratin_B2 (HMM E-Value=0.88) 32 1.3
SB_9054| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.3
SB_38530| Best HMM Match : TPR_1 (HMM E-Value=3.4e-32) 31 3.0
SB_32323| Best HMM Match : WD40 (HMM E-Value=0) 31 3.0
SB_9554| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.0
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.0
SB_20210| Best HMM Match : TPR_1 (HMM E-Value=4.1e-40) 31 3.0
SB_780| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.0
SB_232| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.0
SB_6741| Best HMM Match : WD40 (HMM E-Value=0) 31 4.0
SB_762| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 4.0
SB_52871| Best HMM Match : Cyanate_lyase (HMM E-Value=7.8) 31 4.0
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 31 4.0
SB_24139| Best HMM Match : WD40 (HMM E-Value=8.29989e-42) 31 4.0
SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 4.0
SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22) 30 5.2
SB_42279| Best HMM Match : WD40 (HMM E-Value=2.2e-10) 30 5.2
SB_46434| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.2
SB_37163| Best HMM Match : PQQ (HMM E-Value=0) 30 5.2
SB_12247| Best HMM Match : zf-C4_ClpX (HMM E-Value=1.8) 30 6.9
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 6.9
SB_26293| Best HMM Match : WD40 (HMM E-Value=1.1e-15) 30 6.9
SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07) 29 9.2
SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.2
>SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 588
Score = 503 bits (1240), Expect = e-142
Identities = 232/420 (55%), Positives = 299/420 (71%), Gaps = 22/420 (5%)
Query: 227 VRELSADEKQTIMLSAEFQRFMSRAGRVIERALAESVDIXXXXXXXXXXENALDDKSAAR 286
V ELS ++K I+ S EF RF +A R++ERAL E +DI + ++A
Sbjct: 169 VIELSEEQKDQILGSQEFSRFFDKAVRLVERALTEDLDITIDYSGAEGDDLEGGSQAARE 228
Query: 287 LSLVRTFEEERWSRGRCVTCLDWSTFHPELVLASYYNSDDAPHDPDGVCLVWNTKFKKTT 346
L+L R F +ERWSR R VTCLDWS +PEL++ASY N++DAPH+PDGV L+WN KF KTT
Sbjct: 229 LTLSRDFYDERWSRHRTVTCLDWSNQYPELLVASYNNNEDAPHEPDGVALIWNLKFAKTT 288
Query: 347 PEDIFHCQSAVMSATFARFHPNLILGGTYSGQIVLWDNRVQKRTPVQRTPLSSVAHTHPV 406
PE IFHCQSAVMSATFA+FHPNLI+GGTYSGQIVLWDNR KRTPVQRTPLS+ AHTHPV
Sbjct: 289 PEYIFHCQSAVMSATFAKFHPNLIIGGTYSGQIVLWDNRSSKRTPVQRTPLSATAHTHPV 348
Query: 407 YCLSVIGSQNAHNLISVSTDGRLCSWSLDMLSQPQETLELQHRQAKPVAVTCMDCPQTML 466
YC++V+G+QNAHNLISVSTDG++CSWSLDMLSQPQ+++ELQ++Q+K VAVTCM +
Sbjct: 349 YCVNVVGTQNAHNLISVSTDGKMCSWSLDMLSQPQDSMELQYKQSKSVAVTCMSFLAGDV 408
Query: 467 NNFVLGSEDGNVYTGCLYGQRAGVTECVEAHAGPLTGVSCHAAAGPVDLAHLYLTCSVDW 526
NNFV+GSE+G VYT C +G +AG+++ E H GP+TG+ H+A+GP
Sbjct: 409 NNFVVGSEEGTVYTACRHGSKAGISDVFEGHYGPVTGIDTHSASGP-------------- 454
Query: 527 SVKLWSLKESKPLYSFEDNGDYLVDVRWSPXXXXXXXXXXXXSRLDLWNLNRDTEVPIAS 586
+P YSFEDNGDY+ DV+WSP RLDLWNLN DTEVPIAS
Sbjct: 455 --------SPRPYYSFEDNGDYIYDVKWSPIHPALFATVDGTGRLDLWNLNSDTEVPIAS 506
Query: 587 VQAEGGAAFSRVSWSPAGSLVTAGDDRGKISVYELAEQVWSPRHDEWNKLVYTLQELRNN 646
E A + V W+ +G ++ GDD G++ +Y++ EQ+ +PR+DEW++L TLQ+++ N
Sbjct: 507 TATESLTALNNVQWTQSGQQISVGDDDGRVYIYDVGEQLATPRNDEWSRLQRTLQDIQAN 566
Score = 29.5 bits (63), Expect = 9.2
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 1 MSDRKAELERKKAKL 15
MSDRKAELERK+ KL
Sbjct: 1 MSDRKAELERKRKKL 15
>SB_10356| Best HMM Match : WD40 (HMM E-Value=6e-10)
Length = 283
Score = 71.7 bits (168), Expect = 2e-12
Identities = 61/262 (23%), Positives = 116/262 (44%), Gaps = 28/262 (10%)
Query: 375 YSGQIVLWDNRVQKRTPVQRTPLSSVAHTHPVYCLSVIGSQNAHNLISVSTDGRLCSWSL 434
+ G++ LWD + V + + + +H PV + ++S S DG++ W +
Sbjct: 35 FDGEVHLWDLSCEDEMLVASSGMGNDSHREPV-----------NKILSASGDGKVLLWQV 83
Query: 435 DMLSQPQETLELQHRQAKPVAVTCMDCPQTMLNNFVLGS-EDGNVYTGCLYGQRAGVTEC 493
P E+ +L R + P+++ + G E G+V + G + VT
Sbjct: 84 P----PIESQDL--RLVGGYILQTGAVPRSLRTSKAKGDMEMGDVTSSVPLG--SPVTFA 135
Query: 494 VEAHAGPLTGVSCHAAAGPVDLAHLYLTCSVDWSVKLWSLKESKPLYSFEDNGDYLVDVR 553
H GP+ V+C P +L+LTC D +++L+++ ++KPL S E YL +R
Sbjct: 136 FAPHVGPVFSVNC----SPYH-RNLFLTCGTDGTIRLYTMLQAKPLLSLEPAAGYLFAIR 190
Query: 554 WSPXXXXXXXXXXXXSRLDLWNLNRDTEVPIASVQAEGGAAFSRVSWS-PAGSLVTAGDD 612
WSP RL ++++ + P+ ++ + ++ LV GD
Sbjct: 191 WSPVRPLVFSVATGDGRLLIYDMKVNHINPVTTIDVSDKKPVHTLEYNIHRRQLVATGDS 250
Query: 613 RGKISVYELAEQVWS--PRHDE 632
G I ++ L++++ + PR E
Sbjct: 251 EGVIKIWRLSDELTTQGPRETE 272
>SB_51892| Best HMM Match : WD40 (HMM E-Value=8.7e-14)
Length = 353
Score = 53.6 bits (123), Expect = 5e-07
Identities = 59/252 (23%), Positives = 105/252 (41%), Gaps = 51/252 (20%)
Query: 413 GSQNAHNLISVSTDGRLCSWSLDMLSQPQETLELQH--------------RQAKPV---- 454
G ++ L+S+S DGR+ WS+ + + ++L+ R++ +
Sbjct: 12 GDEHDEILVSISADGRVTKWSIRKGFESADLMKLKRINVTKQKAGGGGSERKSDALISRF 71
Query: 455 -AVTCMDCPQTMLNNFVLGSEDGNVYT-GCLYGQRAGVTECVEAHAGPLTGVSCHAAAGP 512
A C D N ++ G+E+G+V+ C Y ++ E H GP+ V + P
Sbjct: 72 AAGFCFDFSPNDANIYLAGTEEGHVHKCSCSYNEQ--YLESFHGHTGPIYQVKWN----P 125
Query: 513 VDLAHLYLTCSVDWSVKLWSLKESKPLYSF-----------EDNGDYLV----------D 551
+ +LTCS DWSV+LW P+ SF + Y V D
Sbjct: 126 L-YPEAFLTCSADWSVRLWHCDRQFPVMSFLSSTVSTRLYSVSSRIYSVGTQIYSKSVND 184
Query: 552 VRWSPXXXXXXXXXXXXSRLDLWNLNRDTEVPIASVQAEGGAAFSRV--SWSPAGSLVTA 609
+ WSP + +++W+L+ +T P+ S + V + + A +
Sbjct: 185 ISWSPDCATLFACVNDRA-VEIWDLSLNTLDPVVSFVPVQDCKLTTVLFALNTAMQTILV 243
Query: 610 GDDRGKISVYEL 621
GD G+++VY+L
Sbjct: 244 GDSEGQVTVYQL 255
>SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 475
Score = 45.6 bits (103), Expect = 1e-04
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 521 TCSVDWSVKLWSLKESK-PLYSFEDNGDYLVDVRWSPXXXXXXXXXXXXSRLDLWNLNRD 579
T S D +V LW L+ K L+SFE + D + V+WSP RL +W+L++
Sbjct: 339 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 398
Query: 580 TEVPIASVQAEG-----------GAAFSRVSWSPAGSLVTAGDDRGKI-SVYELAEQVWS 627
E A +G A S SW+P V I V+++AE +++
Sbjct: 399 GEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVLCSVSEDNIMQVWQMAENIYN 458
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 42.7 bits (96), Expect = 0.001
Identities = 59/265 (22%), Positives = 107/265 (40%), Gaps = 35/265 (13%)
Query: 312 FHPELVLASYYNSDDAPHD-------PDGVCLVWNT-KFKKTTPEDIFHCQS-----AVM 358
FH +LV + + S+D+P + +G +++N K K +++ Q+ AV
Sbjct: 69 FH-KLVWSPFGMSEDSPSNGLIIGGTDNGEIVIYNANKILKGQKDNLIFAQTNKHSGAVQ 127
Query: 359 SATFARFHPNLILGGTYSGQIVLWDNRVQKRTPVQR-TPLSSVAHTHPVYCLSVIGSQNA 417
+ F F PNL+ G +I +WD +P + TP + + CL+ Q
Sbjct: 128 ALDFNPFQPNLLASGASDSEIFIWD----MNSPGEHFTPGAKSIPPDNISCLA-WNRQVQ 182
Query: 418 HNLISVSTDGRLCSWSLDMLSQPQETLELQHRQAKPVAVTCMDCPQTMLNNFVLGSEDGN 477
H L S S GR W L + E + Q+ + ++ V+ SED
Sbjct: 183 HILASTSPCGRCVVWDL----RKNEPIIKVSDQSATIRCKAVEWHPDTATQMVIASEDDR 238
Query: 478 VYTGCLYGQRAGVT--ECVEAHAGPLTGVSCHAAAGPVDLAHLYLTCSVDWSVKLWSLKE 535
++ R + + +E H+ + + A P D L ++C+ D + W+ E
Sbjct: 239 YPVLQMWDLRFATSPMKVLEGHSRGILSI----AWCPQD-PDLLMSCAKDNRILCWNPNE 293
Query: 536 ----SKPLYSFEDNGDYLVDVRWSP 556
++ +Y + DV+W P
Sbjct: 294 QTAGNEIVYELPTTAQWSFDVKWCP 318
>SB_20145| Best HMM Match : WD40 (HMM E-Value=2.4e-09)
Length = 682
Score = 39.1 bits (87), Expect = 0.011
Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 23/216 (10%)
Query: 416 NAHNLISVSTDGRLCSWSLDMLSQPQET----LELQHRQAKPVAV--------TCMDCPQ 463
N N SVS+DGR+ W++ + S+ T LEL + P T D +
Sbjct: 376 NNLNFFSVSSDGRVVQWTI-VKSELSHTDIINLELPEKSEGPEGTQIKSLGCGTSFDFHK 434
Query: 464 TMLNNFVLGSEDGNVYTGCLYGQRAGVTECVEAHAGPLTGVSCHAAAGPVDLAHLYLTCS 523
T+ F++G+E+G ++ C + + ++ T AA Y T
Sbjct: 435 TINYLFLVGTEEGKIHK-CSKTYTSTYLDTFDSGGIRFTRRPSSPAAQTGQSR--YGTTR 491
Query: 524 VDWSVKLWSLKESKPLYSFEDNGDYLVDVRWSPXXXXXXXXXXXXSRLDLWNLNRDTEVP 583
+ KL +P+++F+ N + DV+W+P ++ +++LN + P
Sbjct: 492 I---CKLTHTL-LEPMFTFDLNSS-VGDVQWAPYASTVFAACTADGKIHVYDLNVNKYEP 546
Query: 584 IA--SVQAEGGAAFSRVSWSPAGSLVTAGDDRGKIS 617
+ SV A+ + + ++++P ++ GD RG ++
Sbjct: 547 LCEQSVVAKKKSKLTHLAFNPDHPILIVGDSRGYVN 582
Score = 33.1 bits (72), Expect = 0.74
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 326 DAPHDPDGVCL-VWNTKFKKTTPEDI-------FHCQSAVMSATFARFHPNLILGGTYSG 377
D +PDG L +W ++K+ + +S VM HP+++ G Y G
Sbjct: 245 DEFREPDGTLLPLWKFSWEKSKRLAVTSLCWYGIKTESGVMCLDIHPEHPHMLAAGFYDG 304
Query: 378 QIVLWDNRVQKRTPVQRTPLSSVAHTHPVY 407
+ ++ + P+ ++ + HT PV+
Sbjct: 305 SVAVYSISEKMNKPLHQSTAKTGKHTDPVW 334
>SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 38.7 bits (86), Expect = 0.015
Identities = 44/210 (20%), Positives = 82/210 (39%), Gaps = 14/210 (6%)
Query: 420 LISVSTDGRLCSWSLDMLSQPQETLELQH---RQAKPVAVTCMDCPQTMLNNFVLGSEDG 476
L S S GR S+ + +P E+++ R A VT D V+GS++G
Sbjct: 6 LASSSLSGRTWDGSVWIFREPSTAPEVEYSCGRAATESGVT--DLKWLDSKRIVVGSDNG 63
Query: 477 NVYTGCLYGQRAGVTEC--VEAHAGPLTGVSCHAAAGPVDLAHLYLTCSVDWSVKLWSLK 534
V G G+ ++ H ++ VS + ++ S D S+K+W L
Sbjct: 64 AVDIWSQSGSLLGLENLASLKEHDNVVSSVSVDCEKSRI------ISASWDRSIKVWDLT 117
Query: 535 ESKPLYSFEDNGDYLVDVRWSPXXXXXXXXXXXXSRLDLWNLNRDTEVPIASVQAEGGAA 594
+ + + + + D+++ V S + LW+ + + + +
Sbjct: 118 SEQCIRTLKGHSDFVLGVDCSGTEKDLFLSASRDGSVVLWDTRKPRPAKRLADPTQYDSI 177
Query: 595 FSRVSWSPAGSLVTA-GDDRGKISVYELAE 623
+ WSP S + A G + G I VY + +
Sbjct: 178 PCCLDWSPLDSSIFATGFEDGSIHVYSIKD 207
>SB_51692| Best HMM Match : WD40 (HMM E-Value=0.24)
Length = 191
Score = 38.3 bits (85), Expect = 0.020
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 24/126 (19%)
Query: 519 YLTCSVDWSVKLWSLKESKPLYSF-----------EDNGDYLV----------DVRWSPX 557
+LTCS DWSV+LW P+ SF + Y V D+ WSP
Sbjct: 16 FLTCSADWSVRLWHCDRQFPVMSFLSSTVSTRLYSVSSRIYSVGTQIYSKSVNDISWSPD 75
Query: 558 XXXXXXXXXXXSRLDLWNLNRDTEVPIASVQAEGGAAFSRV--SWSPAGSLVTAGDDRGK 615
+ +++W+L +T P+ S + V + + A + GD G+
Sbjct: 76 CATLFACVNDRA-VEIWDLRLNTLDPVVSFVPVQDCKLTTVLFALNTAMQTILVGDSEGQ 134
Query: 616 ISVYEL 621
++VY+L
Sbjct: 135 VTVYQL 140
>SB_8639| Best HMM Match : WD40 (HMM E-Value=1.9e-22)
Length = 442
Score = 37.9 bits (84), Expect = 0.026
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 503 GVSCHAAAGPVDLAHLYLTCSVDWSVKLWSLKE-------SKPLYSFEDNGDYLVDVRWS 555
G A P D H+ T S D V +W + E S+PL + E + + + VRW
Sbjct: 16 GAVLDLAWNPFD-DHMIATGSEDARVMIWQIPEHGLHSNISEPLVTLEYHQNRVGIVRWH 74
Query: 556 PXXXXXXXXXXXXSRLDLWNLNRDTEVPIASVQAEGGAAFSRVSWSPAGSLVTAGDDRGK 615
P ++ +WNL +T ++ +S VSW+ GSL T K
Sbjct: 75 PVASNILLSSSHDLKIVIWNL--ETAEAFQIIENHTAIVYS-VSWNRDGSLFTTTSKDKK 131
Query: 616 ISVYE 620
+ + +
Sbjct: 132 LRLVD 136
>SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 37.9 bits (84), Expect = 0.026
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 503 GVSCHAAAGPVDLAHLYLTCSVDWSVKLWSLKE-------SKPLYSFEDNGDYLVDVRWS 555
G A P D H+ T S D V +W + E S+PL + E + + + VRW
Sbjct: 80 GAVLDLAWNPFD-DHMIATGSEDARVMIWQIPEHGLHSNISEPLVTLEYHQNRVGIVRWH 138
Query: 556 PXXXXXXXXXXXXSRLDLWNLNRDTEVPIASVQAEGGAAFSRVSWSPAGSLVTAGDDRGK 615
P ++ +WNL +T ++ +S VSW+ GSL T K
Sbjct: 139 PVASNILLSSSHDLKIVIWNL--ETAEAFQIIENHTAIVYS-VSWNRDGSLFTTTSKDKK 195
Query: 616 ISVYE 620
+ + +
Sbjct: 196 LRLVD 200
>SB_44767| Best HMM Match : WD40 (HMM E-Value=0.074)
Length = 532
Score = 37.1 bits (82), Expect = 0.046
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 373 GTYSGQIVLWDNRVQKRTPVQRTPLSSVAHTHPVYCLSVI-----GSQNAHN--LISVST 425
G Y G I +++ R +P + S HT PV+ L + G+ + H+ L+S+S
Sbjct: 418 GLYDGTIAIYNIRCTDDSPALDSSESVGKHTSPVWQLQWVDREQGGNGDEHDEILVSISA 477
Query: 426 DGRLCSWSL 434
DGR+ WS+
Sbjct: 478 DGRVTKWSI 486
>SB_3361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 37.1 bits (82), Expect = 0.046
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 520 LTCSVDWSVKLWSLKESKPLYSFEDNGDYLVDVRWSPXXXXXXXXXXXXSRLDLWNLNRD 579
LT S D S+K+W++ K LYS + +++ ++SP + + LW +R
Sbjct: 44 LTASDDKSLKVWTVHRQKFLYSLNAHMNWVRCAKFSPDGRLIVSGSDDKT-IKLW--DRT 100
Query: 580 TEVPIASVQAEGGAAFSRVSWSPAGSLVTAGDDRGKISVYELAE 623
++ + + GG S V + P+G+ + AG + + +L E
Sbjct: 101 SKDCVHTFYDPGGFVNS-VEFHPSGTCIAAGGTDSTVKILDLME 143
>SB_53276| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 424
Score = 36.7 bits (81), Expect = 0.060
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 370 ILGGTYSGQIVLWDNRVQKRTPVQRTPLSSVAHTHPVYCLSVIGSQNAHNLISVSTDGRL 429
++G T+SGQ+ +WD R + P RT L S P+ C+ +Q H L + DG L
Sbjct: 166 VVGVTFSGQVKMWDLRNRNNKP-SRTMLLS-GDRVPLLCVDKHPTQ-PHLLAAGGQDGVL 222
Query: 430 CSWSLDMLSQPQETLE 445
W + P LE
Sbjct: 223 SIWDMRQEQYPVTLLE 238
>SB_8844| Best HMM Match : WD40 (HMM E-Value=2.5e-28)
Length = 539
Score = 34.7 bits (76), Expect = 0.24
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 394 RTPLSSVAHTHPVYCLSVIGSQNAHNLISVSTDGRLCSWSLDMLSQPQETLELQHRQAKP 453
+T S V H V+CL G AH LISV L W + + LE+ +K
Sbjct: 86 KTVASFVGHDKDVHCLLTFG---AH-LISVDEGSSLKVWDI---KTTELYLEVGF-DSKT 137
Query: 454 VAVTCMDCPQTMLNNFVLGSEDGNV 478
+TC+ P T LN +L S+ G++
Sbjct: 138 FHITCLMHPSTYLNKILLCSKQGSM 162
>SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)
Length = 736
Score = 34.7 bits (76), Expect = 0.24
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 301 GRC--VTCLDWSTFHPELVLASYYNSDDAPHDPDGVCLVWNTKFKKTTPEDIFHCQSAVM 358
G C VT L WS HP+ ++ S Y DG VW+ + + H VM
Sbjct: 20 GHCGRVTALSWSPHHPDRLVTSSY---------DGSAQVWDVETNQPIANYRGHV-GRVM 69
Query: 359 SATFARFHPNLILGGTYSGQIVLWDNRVQKRT 390
S ++ P+++ G G + W +Q T
Sbjct: 70 SVCWSYLDPDVVFSGGEDGTVRPWRVSLQTHT 101
>SB_39216| Best HMM Match : WD40 (HMM E-Value=1.1e-14)
Length = 867
Score = 33.1 bits (72), Expect = 0.74
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Query: 517 HLYLTCSVDWSVKLWSLKESKPLYSFEDNGDYLVDVRWSPXXXXXXXXXXXXSRLDLWNL 576
+L + + D +VKLW + +K + + E + + + + WS +L +++
Sbjct: 124 NLLTSAAYDLTVKLWDINAAKSVITLEGHNEQVFSLAWS-ADGKQLATFSRDKKLRIYD- 181
Query: 577 NRDTEVPIASVQAEGGAAFSRVSW-SPAGS-LVTAGDDR---GKISVYE 620
R P+ G+ RV W P G+ L+ G D+ +SVY+
Sbjct: 182 PRAQVTPVLEGPGPEGSRGGRVIWGGPDGNMLLVCGSDKMSHRTVSVYD 230
>SB_5414| Best HMM Match : WD40 (HMM E-Value=6.6e-15)
Length = 490
Score = 33.1 bits (72), Expect = 0.74
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 14/86 (16%)
Query: 467 NNFVL-GSEDGNVYTGCLY-GQRAGVTECVEAHAGPLTGVS-CHAAAGPVDLAHLYLTCS 523
+N++L GS D N Y + R V C+ HAG +T V C P D+ + +TCS
Sbjct: 87 DNYLLSGSSDNNAYIWKVSDADRPPV--CLRGHAGEVTSVVWC-----PQDITKV-VTCS 138
Query: 524 VDWSVKLWSLKESKPLYSFEDNGDYL 549
D +V++W + F++ DY+
Sbjct: 139 DDTTVRIWRMNRG---VEFQERTDYI 161
>SB_59771| Best HMM Match : WD40 (HMM E-Value=3.9e-09)
Length = 204
Score = 32.7 bits (71), Expect = 0.98
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 525 DWSVKLWSLKESKPLYSFEDNGDYLVDVRWSPXXXXXXXXXXXXSRLDLWNLNRDTEV-- 582
D S+ +W ++ + L + + D + + W+P + W N DT++
Sbjct: 94 DHSICIWDWRKEEKLATTRGHKDMIFVLEWNP-FNPNHFVSVGEKHIKFWTHN-DTKIDK 151
Query: 583 -PIASVQAEGGAAFSRVSWSPAGSLVTAGDDRGKISVYE 620
P+ +A A V SP L AG D G + V++
Sbjct: 152 RPVTFGKAGTAATMLCVCHSPIDDLCFAGSDTGHVYVWQ 190
>SB_42442| Best HMM Match : Keratin_B2 (HMM E-Value=0.88)
Length = 274
Score = 32.3 bits (70), Expect = 1.3
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 521 TCSVDWSVKLWSLKESKPLYSFEDNGDYLVDVRWSPXXXXXXXXXXXXSRLDLWNLNRDT 580
+CS D + +W + +S Y +GD L+DV W S LD+W+++R T
Sbjct: 173 SCSGDSLLDVWDVSQST--YPPSCSGDSLLDV-WDISPSTYPPSCSGDSLLDVWDVSRST 229
Query: 581 EVPIAS 586
P S
Sbjct: 230 YPPSCS 235
>SB_9054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 32.3 bits (70), Expect = 1.3
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 61 GVAPVKDVXXXXXXXXXXXPPQTASPDASLPHTDKASLQLQGGPKKQPQ-ELQVVFVQST 119
GV ++ P S D + P T + Q GG + QPQ Q Q+T
Sbjct: 42 GVRTATEIERARKSTEVRAEPSENSEDGNFPETSSTNSQATGGTQNQPQLPTQAPMSQAT 101
Query: 120 DIP 122
IP
Sbjct: 102 GIP 104
>SB_38530| Best HMM Match : TPR_1 (HMM E-Value=3.4e-32)
Length = 803
Score = 31.1 bits (67), Expect = 3.0
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 61 GVAPVKDVXXXXXXXXXXXPPQTASPDASLPHTDKASLQLQGGPKKQPQ-ELQVVFVQST 119
GV ++ P S D + P T + + GG + QPQ Q Q+T
Sbjct: 439 GVRTATEIERARKSTEVRAEPSENSEDGNFPETSSTNSEATGGTQNQPQLPTQAPMSQAT 498
Query: 120 DIP 122
IP
Sbjct: 499 GIP 501
>SB_32323| Best HMM Match : WD40 (HMM E-Value=0)
Length = 611
Score = 31.1 bits (67), Expect = 3.0
Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 492 ECVEAHAGPLTGVSCHAAAGPVDLAHLYLTCSVDWSVKLWSLKESKPLYSFEDNGDYL 549
E + H GP+ G++ H + L+++ D+ +K+W+ K+ + L++ + DY+
Sbjct: 45 ERFDEHDGPVRGINFHT------VQPLFVSGGDDYKIKVWNYKQKRCLFTLLGHLDYI 96
>SB_9554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 31.1 bits (67), Expect = 3.0
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 61 GVAPVKDVXXXXXXXXXXXPPQTASPDASLPHTDKASLQLQGGPKKQPQ-ELQVVFVQST 119
GV ++ P S D + P T + + GG + QPQ Q Q+T
Sbjct: 42 GVRTATEIERARKSTEVRAEPSENSEDGNFPETSSTNSEATGGTQNQPQLPTQAPMSQAT 101
Query: 120 DIP 122
IP
Sbjct: 102 GIP 104
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 31.1 bits (67), Expect = 3.0
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 330 DPDGVCLVWNTKFKKTTPEDIFHCQSAVMSATFARFHPNLILGGTYS 376
DPDGV +V TK + FH VMS T ILG Y+
Sbjct: 337 DPDGVLMVHTTKQYPSQDATAFHVFGRVMSGTLYAGQQVRILGENYT 383
>SB_20210| Best HMM Match : TPR_1 (HMM E-Value=4.1e-40)
Length = 772
Score = 31.1 bits (67), Expect = 3.0
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 61 GVAPVKDVXXXXXXXXXXXPPQTASPDASLPHTDKASLQLQGGPKKQPQ-ELQVVFVQST 119
GV ++ P S D + P T + + GG + QPQ Q Q+T
Sbjct: 378 GVRTATEIERARKSTEVRAEPSENSEDGNFPETSSTNSEATGGTQNQPQLPTQAPMSQAT 437
Query: 120 DIP 122
IP
Sbjct: 438 GIP 440
>SB_780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 31.1 bits (67), Expect = 3.0
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 61 GVAPVKDVXXXXXXXXXXXPPQTASPDASLPHTDKASLQLQGGPKKQPQ-ELQVVFVQST 119
GV ++ P S D P T + + GG + QPQ Q Q+T
Sbjct: 42 GVRTATEIERARKSTGVRAEPSENSEDGDFPETSSTNSEATGGTQNQPQLSTQAPMSQAT 101
Query: 120 DIP 122
IP
Sbjct: 102 GIP 104
>SB_232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 713
Score = 31.1 bits (67), Expect = 3.0
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 61 GVAPVKDVXXXXXXXXXXXPPQTASPDASLPHTDKASLQLQGGPKKQPQ-ELQVVFVQST 119
GV ++ P S D + P T + + GG + QPQ Q Q+T
Sbjct: 477 GVRTATEIERARKSTEVRAEPSENSEDGNFPETSSTNSEATGGTQNQPQLPTQAPMSQAT 536
Query: 120 DIP 122
IP
Sbjct: 537 GIP 539
>SB_6741| Best HMM Match : WD40 (HMM E-Value=0)
Length = 714
Score = 30.7 bits (66), Expect = 4.0
Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Query: 490 VTECVEAHAGPLTGVSCHAAAGPVD-LAHLYLTCSVDWSVKLWSLKESKPLYSFEDNGDY 548
V + E PL G + H + V L T S D ++ LW+L+ + L E +
Sbjct: 41 VEKGTELAQSPLDGHNYHVNSCSVSPFGTLMATASTDSTLMLWNLETGECLAVLEGHTGA 100
Query: 549 LVDVRWSPXXXXXXXXXXXXSRLDLWNLNRDTEVPIASVQAEGGAAFSRVSWSPAGSLVT 608
+ R+SP + + +W++ + P+ V + ++ + +++P G +
Sbjct: 101 VRVCRFSPNSQFLISGSADETFI-IWDVL--LKKPVRCVD-KLESSVTACAFTPDGLHII 156
Query: 609 AGDDRGKISVYE 620
G GK++++E
Sbjct: 157 TGTSEGKLAIWE 168
>SB_762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 30.7 bits (66), Expect = 4.0
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 522 CSVDWSVKLWSLKESKPLYSFEDNGDYLVDVRWSPXXXXXXXXXXXXSRLDLWNLNRDTE 581
CS+D V++W L K L + + + V +SP +++L NL +
Sbjct: 40 CSLDSHVRIWDLVSGKQLKTIDCDPVDTWTVTFSP-DSKILATGSHSGKVNLINLELGKK 98
Query: 582 VPIASVQAEGGAAFSRVSWSPAGSLVTAGDDRGKISVYEL 621
+S+ G S +++SP G + G G I++++L
Sbjct: 99 E--SSLDTRGKFTMS-LAYSPDGHYIACGAIDGIINIFDL 135
>SB_52871| Best HMM Match : Cyanate_lyase (HMM E-Value=7.8)
Length = 346
Score = 30.7 bits (66), Expect = 4.0
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 61 GVAPVKDVXXXXXXXXXXXPPQTASPDASLPHTDKASLQLQGGPKKQPQ-ELQVVFVQST 119
GV ++ P S D + P T + + GG + QPQ Q Q+T
Sbjct: 42 GVRTATEIERGRKSTEVRAEPSENSEDGNFPETSSTNSEATGGTQNQPQLPTQAPMSQAT 101
Query: 120 DIP 122
IP
Sbjct: 102 GIP 104
>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 3369
Score = 30.7 bits (66), Expect = 4.0
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 366 HPNLILGGTYSGQIVLWDNRVQKRTPVQRTPLSSVAHTHPVYCLSVIGSQNAHNLISVST 425
+P++++ G +G + +WD + R HT ++ + S +AH LISVS
Sbjct: 3218 NPDIVISGASNGGVRVWDLSTGECLQHLR------GHT---CAITTVASTHAH-LISVSI 3267
Query: 426 DGRLCSWSLDMLSQPQETLELQHRQAKPVAVTCMDCPQTMLNNFVLGSEDGNVYTGCLYG 485
D +C W + T + H + + C + N FV G + V L G
Sbjct: 3268 DNSMCVWE-------RSTGKCLHYNLRQIPDLCSNVAMLTDNLFVTGGQGVIVVWDLLAG 3320
Query: 486 Q 486
+
Sbjct: 3321 K 3321
>SB_24139| Best HMM Match : WD40 (HMM E-Value=8.29989e-42)
Length = 198
Score = 30.7 bits (66), Expect = 4.0
Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Query: 490 VTECVEAHAGPLTGVSCHAAAGPVD-LAHLYLTCSVDWSVKLWSLKESKPLYSFEDNGDY 548
V + E PL G + H + V L T S D ++ LW+L+ + L E +
Sbjct: 41 VEKGTELAQSPLDGHNYHVNSCSVSPFGTLMATASTDSTLMLWNLETGECLAVLEGHTGA 100
Query: 549 LVDVRWSPXXXXXXXXXXXXSRLDLWNLNRDTEVPIASVQAEGGAAFSRVSWSPAGSLVT 608
+ R+SP + + +W++ + P+ V + ++ + +++P G +
Sbjct: 101 VRVCRFSPNSQFLISGSADETFI-IWDVL--LKKPVRCVD-KLESSVTACAFTPDGLHII 156
Query: 609 AGDDRGKISVYE 620
G GK++++E
Sbjct: 157 TGTSEGKLAIWE 168
>SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 30.7 bits (66), Expect = 4.0
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 419 NLISVSTDGRLCSWSLDMLSQPQETLELQHRQAKPVA 455
NLI S D RLC + +D+ S+P +TL + + VA
Sbjct: 82 NLIVGSYDRRLCWFDMDLSSKPYKTLRSHKKALRQVA 118
>SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22)
Length = 453
Score = 30.3 bits (65), Expect = 5.2
Identities = 13/65 (20%), Positives = 28/65 (43%)
Query: 514 DLAHLYLTCSVDWSVKLWSLKESKPLYSFEDNGDYLVDVRWSPXXXXXXXXXXXXSRLDL 573
D A + T S D +VK+W + ++S N + + W+P + + +
Sbjct: 380 DDADMLATASFDGTVKVWDVDTLSGVHSSPGNEGIIYALSWAPGDLNAIAGATAKNGVFI 439
Query: 574 WNLNR 578
W++ +
Sbjct: 440 WDIGK 444
>SB_42279| Best HMM Match : WD40 (HMM E-Value=2.2e-10)
Length = 291
Score = 30.3 bits (65), Expect = 5.2
Identities = 13/65 (20%), Positives = 28/65 (43%)
Query: 514 DLAHLYLTCSVDWSVKLWSLKESKPLYSFEDNGDYLVDVRWSPXXXXXXXXXXXXSRLDL 573
D A + T S D +VK+W + ++S N + + W+P + + +
Sbjct: 218 DDADMLATASFDGTVKVWDVDTLSGVHSSPGNEGIIYALSWAPGDLNAIAGATAKNGVFI 277
Query: 574 WNLNR 578
W++ +
Sbjct: 278 WDIGK 282
>SB_46434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 873
Score = 30.3 bits (65), Expect = 5.2
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 420 LISVSTDGRLCSWSLDMLSQPQETLELQHRQAKPVAVTCMD 460
+++V + G L + +D + QPQ T + KP+ ++C+D
Sbjct: 351 ILNVFSRGALKPFEMDRVFQPQSTQVEVFEEVKPLVISCVD 391
>SB_37163| Best HMM Match : PQQ (HMM E-Value=0)
Length = 419
Score = 30.3 bits (65), Expect = 5.2
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 439 QPQETLELQHRQAKPVAVTCM-DCPQTMLNNFVLGSEDGNVYT-GCLYGQR 487
Q +E +L R K C+ + P++ +GSEDGN+Y G LYG +
Sbjct: 43 QCKEQADLMLRNCKKSCKLCVVEDPRSYEPLLYIGSEDGNLYAIGVLYGDQ 93
>SB_12247| Best HMM Match : zf-C4_ClpX (HMM E-Value=1.8)
Length = 213
Score = 29.9 bits (64), Expect = 6.9
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 147 HATD---YYDEYNLNPGLEWEDEFTVLTFDG 174
H TD Y D+Y L P L E EF +LT +G
Sbjct: 56 HITDLPSYLDDYKLYPSLPPEQEFLLLTVEG 86
>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2982
Score = 29.9 bits (64), Expect = 6.9
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 147 HATD---YYDEYNLNPGLEWEDEFTVLTFDG 174
H TD Y D+Y L P L E EF +LT +G
Sbjct: 2817 HITDLPSYLDDYKLYPSLPPEQEFLLLTVEG 2847
>SB_26293| Best HMM Match : WD40 (HMM E-Value=1.1e-15)
Length = 140
Score = 29.9 bits (64), Expect = 6.9
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 543 EDNGDYLVDVRWSPXXXXXXXXXXXXS---RLDLWNLNRDT-EVPIASVQAEGGAAFSRV 598
E + D++ DV W+P S R+ +W+ N + E + V + V
Sbjct: 35 EAHSDWVRDVAWAPNVGLPTSTIASCSQDCRVIIWSRNEEEGEGWSSKVLKKFNDVVWHV 94
Query: 599 SWSPAGSLVTAGDDRGKISVY-ELAEQVW 626
SWS G+++ K+S++ E E W
Sbjct: 95 SWSVTGNILAVSGGDNKVSLWKESLEGQW 123
>SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07)
Length = 1213
Score = 29.5 bits (63), Expect = 9.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 509 AAGPVDLAHLYLTCSVDWSVKLWSLKESKP 538
AA P + L+LT +V +KLW L+ + P
Sbjct: 155 AAHPTEAYDLFLTAAVTDGIKLWDLRTNNP 184
>SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 29.5 bits (63), Expect = 9.2
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 458 CMDCPQTMLNNFVLGSEDGNVYTGCLYGQRAGVTECVEAHAGPLTGVSCHAAAGPVDLAH 517
C+ C + N V GS D + ++ R ECV G VSC P
Sbjct: 604 CVSCLRFDENTLVSGSHDSTIR---VWDMRTW--ECVLVLQGHEGAVSCLEFDAP----- 653
Query: 518 LYLTCSVDWSVKLWSLKESKPLYSFEDNGDYLVDVR 553
L+ S D ++KLW+++ L + + D + V+
Sbjct: 654 FVLSGSADKTIKLWNVESGDCLNTLRGHADAVTSVK 689
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.131 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,506,154
Number of Sequences: 59808
Number of extensions: 820288
Number of successful extensions: 1828
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1783
Number of HSP's gapped (non-prelim): 67
length of query: 672
length of database: 16,821,457
effective HSP length: 87
effective length of query: 585
effective length of database: 11,618,161
effective search space: 6796624185
effective search space used: 6796624185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)
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