GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002375-TA|BGIBMGA002375-PA|IPR011046|WD40-like,
IPR001680|WD-40 repeat
         (672 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative transcrip...    26   2.8  
AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein p...    26   3.7  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    25   6.5  
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    25   8.6  

>AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative
           transcription factor protein.
          Length = 593

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 371 LGGTYSGQIVLWDNRVQKRTPVQRTPLSSVAHTHPVY 407
           L G+ + ++ L  N   K +P  R PL S+  + P++
Sbjct: 318 LAGSLADELTLQQNDYFKGSPAHRKPLLSMGISFPIF 354


>AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein
           protein.
          Length = 400

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 453 PVAVTCMDCPQTMLNNFVLGS 473
           P A+TC+DC + M+   + GS
Sbjct: 366 PNAMTCLDCREDMVEPHITGS 386


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 366 HPNLILGGTYSGQIVLWDNRVQKR 389
           HPN++LGG ++     W +   KR
Sbjct: 113 HPNVVLGGDFNAWHEAWGSARTKR 136


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 82  QTASPDASLPHTDKASLQLQGGPKKQPQELQ 112
           Q   P  SLPH  +  LQL    ++Q Q+ Q
Sbjct: 375 QQQQPRQSLPHRKQTQLQLSPRLQQQQQQQQ 405


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.131    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 629,870
Number of Sequences: 2123
Number of extensions: 24798
Number of successful extensions: 28
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 4
length of query: 672
length of database: 516,269
effective HSP length: 69
effective length of query: 603
effective length of database: 369,782
effective search space: 222978546
effective search space used: 222978546
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)