GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002374-TA|BGIBMGA002374-PA|IPR002110|Ankyrin
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    34   0.023
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        34   0.030
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom...    32   0.092
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    31   0.16 
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    27   3.5  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    27   4.6  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    26   8.0  

>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 34.3 bits (75), Expect = 0.023
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 5   TPLHWAVQRGHGGAAAELVRCGADPTALSKFHKSP 39
           TPLH+AV + +    A+L+R GADP  L+   K+P
Sbjct: 435 TPLHYAVTQKNAKLVAKLLRNGADPAMLNGNGKTP 469


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 33.9 bits (74), Expect = 0.030
 Identities = 14/24 (58%), Positives = 16/24 (66%)

Query: 5   TPLHWAVQRGHGGAAAELVRCGAD 28
           TPLH+A+  GH     ELVR GAD
Sbjct: 176 TPLHFALAEGHPDVGVELVRAGAD 199


>SPBP16F5.05c |||ribosome biogenesis protein
           Nop8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 32.3 bits (70), Expect = 0.092
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 5   TPLHWAVQRGHGGAAAELVRCGADPTALSKFHKSP 39
           T +HWA   GH      L+  G DP   + + KSP
Sbjct: 73  TAMHWAALNGHAEICKLLLEAGGDPHIKNIYEKSP 107


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 642

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 2  LRMTPLHWAVQRGHGGAAAELVRCGADPTALSK 34
          L+  P+HWA +RG       LV+ GADP    K
Sbjct: 67 LQAAPIHWAAKRGSVKTVHYLVQHGADPLLKDK 99


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 274 DVTNIAKLWSTLRRKLAVVNWRQ 296
           ++ NI+ +W T+R  L++ N RQ
Sbjct: 259 EIANISDMWKTIRAALSLKNMRQ 281


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 5   TPLHWAVQRGHGGAAAELVRCGADPTALSKFHKSP 39
           T LHWA   GH      L+R  AD    ++  ++P
Sbjct: 250 TSLHWACSMGHIEMIKLLLRANADIGVCNRLSQTP 284


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/37 (27%), Positives = 24/37 (64%)

Query: 96  VQNIPGRSDSGRGEERAPQEQPIKIEIDNRDNVEVTG 132
           V+N+   +  G+ + +  + QP++I++  R+NV++ G
Sbjct: 10  VENLNTFAVVGQDQWKRKEPQPVQIDVYMRNNVQLAG 46


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,172,514
Number of Sequences: 5004
Number of extensions: 40121
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 10
length of query: 314
length of database: 2,362,478
effective HSP length: 73
effective length of query: 241
effective length of database: 1,997,186
effective search space: 481321826
effective search space used: 481321826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)