GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002373-TA|BGIBMGA002373-PA|IPR002110|Ankyrin
         (124 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        27   0.082
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        27   0.082
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        27   0.082
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   1.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   3.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   9.4  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 0.082
 Identities = 13/27 (48%), Positives = 14/27 (51%)

Query: 59  SNNHVETCAVLLRAGVSRDSRTKVDRT 85
           S   +E C  L RA  SRD R K D T
Sbjct: 392 SEGDLEKCKALTRAAYSRDVRPKYDCT 418


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 0.082
 Identities = 13/27 (48%), Positives = 14/27 (51%)

Query: 59  SNNHVETCAVLLRAGVSRDSRTKVDRT 85
           S   +E C  L RA  SRD R K D T
Sbjct: 392 SEGDLEKCKALTRAAYSRDVRPKYDCT 418


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 0.082
 Identities = 13/27 (48%), Positives = 14/27 (51%)

Query: 59  SNNHVETCAVLLRAGVSRDSRTKVDRT 85
           S   +E C  L RA  SRD R K D T
Sbjct: 392 SEGDLEKCKALTRAAYSRDVRPKYDCT 418


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 85  TPLHLAAYAGHADVIALLLRY 105
           TPL    Y G++ +I LL+R+
Sbjct: 121 TPLLKKLYGGNSTIIFLLIRF 141


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 39  PLDRQRLPVQLGT 51
           P+D QR P+Q G+
Sbjct: 138 PMDTQRCPLQFGS 150


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 39  PLDRQRLPVQLGT 51
           P+DRQ  P+ LG+
Sbjct: 170 PMDRQSCPLILGS 182


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.132    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,066
Number of Sequences: 429
Number of extensions: 1379
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 124
length of database: 140,377
effective HSP length: 51
effective length of query: 73
effective length of database: 118,498
effective search space:  8650354
effective search space used:  8650354
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)