GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002372-TA|BGIBMGA002372-PA|undefined
         (101 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.15 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       19   7.6  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.0 bits (52), Expect = 0.15
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 14  TKPRSVPGQP--VLNHASRLVDGCRFFTSAENEENSIPGRGARIVPPG 59
           T P S  G    VLN   +L++  + F S   + +S PG G    P G
Sbjct: 716 TVPESNNGSSPSVLNAIEKLIE--KSFDSRSRQNSSFPGHGPTTAPMG 761


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 72  FGKYEALTPHVEALGRVAAQQKIHFFN 98
           F K+  L P  +A  ++AA++ I  F+
Sbjct: 226 FSKFLKLYPLRKATAKIAAKRLIEDFS 252


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.138    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,304
Number of Sequences: 317
Number of extensions: 806
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 101
length of database: 114,650
effective HSP length: 48
effective length of query: 53
effective length of database: 99,434
effective search space:  5270002
effective search space used:  5270002
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.6 bits)
S2: 38 (19.4 bits)