GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002372-TA|BGIBMGA002372-PA|undefined
         (101 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ...    24   5.2  
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...    23   6.9  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    23   9.1  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    23   9.1  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    23   9.1  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    23   9.1  

>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 30  RLVDGCRFFTSAENEENSIPGRGARIVPP---GGDTKTQKRRLLRF 72
           R+++  RF  S+EN   +I    A+ V P   G   + QK  L RF
Sbjct: 104 RVIEYSRFIQSSENCSKTIVDTIAKFVSPLRFGLGRRVQKYSLKRF 149


>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 2   LIRHMLMARALNTKPRSV 19
           L+ H+L+   +NTK RSV
Sbjct: 105 LVEHLLLQVRMNTKSRSV 122


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/10 (80%), Positives = 9/10 (90%)

Query: 32  VDGCRFFTSA 41
           +DGCRFFT A
Sbjct: 210 LDGCRFFTCA 219


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)

Query: 11  ALNTKPRSVPGQPVLN 26
           ALNT P S   QP+LN
Sbjct: 238 ALNTTPSSFEEQPLLN 253


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 32  VDGCRFFTSAENEENSIPGRGARIVPPGGDTKTQKRRLLRFGKYEALTPHVEALGRVAAQ 91
           + G +FFT+  +   ++ G    ++P  G   T    ++   ++   T  V A G V+ +
Sbjct: 275 ISGSKFFTTTTDASGTVSGTVEVVLPTAG---TNTMTVVSGSRF--FTSVVSASGTVSGE 329

Query: 92  QKI 94
           Q I
Sbjct: 330 QVI 332


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 63  KTQKRRLLRFGKYEALTPHVEA 84
           +TQKRRL R  +Y  LT  + A
Sbjct: 471 QTQKRRLWRAREYSVLTKGMTA 492


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.138    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 450,102
Number of Sequences: 5004
Number of extensions: 16118
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 7
length of query: 101
length of database: 2,362,478
effective HSP length: 63
effective length of query: 38
effective length of database: 2,047,226
effective search space: 77794588
effective search space used: 77794588
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 47 (23.0 bits)