GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002372-TA|BGIBMGA002372-PA|undefined
         (101 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1473 - 27358162-27358275,27358968-27359024,27359102-273592...    27   2.6  
04_04_1542 - 34264994-34265331,34266195-34267029                       27   2.6  
05_01_0296 - 2303344-2303395,2303732-2304180,2304287-2304355,230...    26   4.6  
04_04_0312 + 24314940-24315143,24316074-24316253,24316801-243170...    26   4.6  
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110...    26   6.0  
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400...    25   8.0  
03_01_0469 - 3613062-3613745,3613952-3614512,3614600-3614690,361...    25   8.0  

>08_02_1473 -
           27358162-27358275,27358968-27359024,27359102-27359245,
           27359770-27359934,27360020-27360208,27360301-27360535,
           27360826-27360932,27361020-27361103,27361185-27361695,
           27361793-27361854,27363373-27363456
          Length = 583

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 11  ALNTKPRSVPGQPVLNHASRLVDGCRFFTSAENEENSIPGRGARIVPPGGDTKTQ 65
           A  T  R VP    +  + +LVD    F   + EE+S   + +R VP G D  T+
Sbjct: 277 ATGTVERQVPTSGKVGTSDQLVDE-ENFQDDDVEEHSFVRQHSRRVPSGNDESTE 330


>04_04_1542 - 34264994-34265331,34266195-34267029
          Length = 390

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 40  SAENEENSIPGRGARIVPPGGDTKTQKRRLLRFGKYEALTPHVEALGRVAAQQK 93
           SAE E +     G      GG+ + ++RRL R G     +  V A   VA ++K
Sbjct: 278 SAEEEMSGSSESGEEEEGSGGEPEAKRRRLSRLGSSVVRSATVVARTLVACEEK 331


>05_01_0296 -
           2303344-2303395,2303732-2304180,2304287-2304355,
           2304539-2306546,2311181-2311425
          Length = 940

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 30  RLVDGCRFFTSAENEENSIPGRGARIV 56
           +L+D   F ++ E E+N I G  AR+V
Sbjct: 328 KLIDMLGFVSTMEEEQNIIRGHAARVV 354


>04_04_0312 +
          24314940-24315143,24316074-24316253,24316801-24317030,
          24317205-24317375,24317685-24317790,24318099-24318305,
          24318646-24318806,24319001-24319103
          Length = 453

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 48 IPGRGARIVPPGGDTKTQKR 67
          +PGR A +VPP G  +T+++
Sbjct: 54 LPGRPAALVPPSGKKQTKEK 73


>02_04_0038 -
           19110520-19110574,19110684-19110811,19110912-19111085,
           19111189-19111320,19111391-19111489,19111680-19111751,
           19111831-19111887,19111957-19112130,19112211-19112305,
           19112478-19112577,19112672-19112824,19112896-19114026,
           19114621-19114731,19114829-19114991,19115364-19115458,
           19115613-19115804,19115929-19116069
          Length = 1023

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 67  RRLLRFGKYEALTPHVEALGRVAAQQKIHFFN 98
           R +L  GK   L  HV+   R+  ++ IH FN
Sbjct: 314 RAILSAGKSFQLVQHVQETHRIQTREVIHEFN 345


>12_02_1042 +
           25638585-25638711,25639585-25639745,25639873-25640064,
           25640221-25640315,25640645-25640807,25640905-25641015,
           25641611-25642741,25642813-25642965,25643060-25643159,
           25643333-25643427,25643508-25643681,25643751-25643807,
           25643887-25643958,25644151-25644249,25644320-25644451,
           25644549-25644722,25644830-25644957,25645065-25645119
          Length = 1072

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 67  RRLLRFGKYEALTPHVEALGRVAAQQKIHFFN 98
           R +L  GK   L  HV+   R+  ++ +H FN
Sbjct: 363 RAILSAGKSFQLVQHVQETHRIQTREVVHEFN 394


>03_01_0469 -
           3613062-3613745,3613952-3614512,3614600-3614690,
           3614782-3614870,3614962-3615027,3615309-3615423,
           3615521-3615966
          Length = 683

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 38  FTSAENEENSIPGRGARIVPPGGDTK--TQKRRLL-RFGKYEALTPHVEALGRVAAQQK 93
           F  +E +   +    + + P  G  K  T KR +L R+G  E L PH   +G ++ + +
Sbjct: 61  FKKSEGDPFHVETTVSLMSPKPGKEKSCTHKRTILPRYGSMEYLPPHSPVVGMISPKHQ 119


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.138    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,820
Number of Sequences: 37544
Number of extensions: 124105
Number of successful extensions: 209
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 7
length of query: 101
length of database: 14,793,348
effective HSP length: 71
effective length of query: 30
effective length of database: 12,127,724
effective search space: 363831720
effective search space used: 363831720
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 53 (25.4 bits)