GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002372-TA|BGIBMGA002372-PA|undefined
         (101 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.6  
SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1)              27   2.1  
SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.3  
SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)                   26   6.3  

>SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 40  SAENEENSIPGRGARIVPPGGDTKTQKRRLLRFGK--YEALTPHVEAL 85
           SAE  E  I  +G R VP G    T  R      K  ++   PHV+ L
Sbjct: 600 SAEKIEEPISSQGHRTVPEGASVDTASRACAVGAKDNFDVSVPHVKPL 647


>SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1)
          Length = 766

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 5  HMLMARALNTKPRSVPGQPVLNHASR-LVDGCRFFTSAENE 44
          H +M + +   P+S      L   +  LVDG R+F  AE E
Sbjct: 18 HEIMIKNIEQDPKSEKSYQALRDTTHDLVDGLRYFGQAEEE 58



 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 5   HMLMARALNTKPRSVPGQPVLNHASR-LVDGCRFFTSAENE 44
           H +M + +   P+S      L   +  LVDG R+F  AE E
Sbjct: 116 HEIMIKNIEQDPKSEKSYQALRDTTHDLVDGLRYFGQAEEE 156



 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 5   HMLMARALNTKPRSVPGQPVLNHASR-LVDGCRFFTSAENE 44
           H +M + +   P+S      L   +  LVDG R+F  AE E
Sbjct: 263 HEIMIKNIEQDPKSEKSYQALRDTTHDLVDGLRYFGQAEEE 303


>SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 837

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/56 (26%), Positives = 25/56 (44%)

Query: 29  SRLVDGCRFFTSAENEENSIPGRGARIVPPGGDTKTQKRRLLRFGKYEALTPHVEA 84
           SR V G R FT+  N   +   R +R +P  G  + +  + L    +  + P V +
Sbjct: 749 SRAVPGARLFTNEANAAIAKGTRSSRPIPVKGPLREEIEQWLFLKHWNEVVPWVSS 804


>SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)
          Length = 1686

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 43  NEENSIPGRGARIVPPGGDTKTQKRRLLRFGK--YEALTPHVEALGRVAAQQKI 94
           N  +S+   G RI+P G D    +R+LL      Y+ +    EA+ R+A  +K+
Sbjct: 283 NIADSMEKSGLRIIPVGIDPGVTRRQLLTIATNWYDVI---YEAVPRIATPEKL 333


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.138    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,414,049
Number of Sequences: 59808
Number of extensions: 122191
Number of successful extensions: 198
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 195
Number of HSP's gapped (non-prelim): 6
length of query: 101
length of database: 16,821,457
effective HSP length: 71
effective length of query: 30
effective length of database: 12,575,089
effective search space: 377252670
effective search space used: 377252670
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 53 (25.4 bits)