GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002372-TA|BGIBMGA002372-PA|undefined
         (101 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40413-4|AAM51516.1|  699|Caenorhabditis elegans Hypothetical pr...    28   1.4  
U40413-3|AAK39176.1|  673|Caenorhabditis elegans Hypothetical pr...    28   1.4  
Z50044-8|CAA90360.1|  591|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z81485-2|CAB03974.2|  708|Caenorhabditis elegans Hypothetical pr...    26   5.5  
AF000261-1|AAB52922.1|  505|Caenorhabditis elegans Hypothetical ...    26   5.5  
Z93239-2|CAB07529.2| 1218|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z69660-2|CAD57697.1| 1218|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z81475-3|CAB03909.1|  303|Caenorhabditis elegans Hypothetical pr...    25   9.6  
AF016657-13|AAB93657.1|  274|Caenorhabditis elegans Hypothetical...    25   9.6  

>U40413-4|AAM51516.1|  699|Caenorhabditis elegans Hypothetical
           protein C18B2.5b protein.
          Length = 699

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 11/77 (14%)

Query: 19  VPGQPVLNHASRLVDGCRFFTSAENEENSIPGRGARIVPPGGDTKTQKRRLLRFGKYEAL 78
           +P QP  +H+S+ VD   +    E EE       AR+ P     K     +   GKYE +
Sbjct: 387 LPPQPKSSHSSKSVDSSIY----EEEE-------ARVSPLAAKQKAAGEHIASSGKYELV 435

Query: 79  TPHVEALGRVAAQQKIH 95
            P    +   +   KI+
Sbjct: 436 VPQYYVVENFSKNDKIN 452


>U40413-3|AAK39176.1|  673|Caenorhabditis elegans Hypothetical
           protein C18B2.5a protein.
          Length = 673

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 11/77 (14%)

Query: 19  VPGQPVLNHASRLVDGCRFFTSAENEENSIPGRGARIVPPGGDTKTQKRRLLRFGKYEAL 78
           +P QP  +H+S+ VD   +    E EE       AR+ P     K     +   GKYE +
Sbjct: 361 LPPQPKSSHSSKSVDSSIY----EEEE-------ARVSPLAAKQKAAGEHIASSGKYELV 409

Query: 79  TPHVEALGRVAAQQKIH 95
            P    +   +   KI+
Sbjct: 410 VPQYYVVENFSKNDKIN 426


>Z50044-8|CAA90360.1|  591|Caenorhabditis elegans Hypothetical
           protein F22B5.9 protein.
          Length = 591

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 33  DGCRFFTSAENEENSIPGRGARIVPPGG 60
           DG  ++  A+      PGR A+I+ P G
Sbjct: 530 DGTGYYIEADENSTYFPGRCAKIIGPKG 557


>Z81485-2|CAB03974.2|  708|Caenorhabditis elegans Hypothetical
           protein C49F5.2 protein.
          Length = 708

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 21  GQPVLNHASRLVDGCRFFTSAEN 43
           G P++ +   LVDG R  +S EN
Sbjct: 479 GTPIIEYCGELVDGERLHSSLEN 501


>AF000261-1|AAB52922.1|  505|Caenorhabditis elegans Hypothetical
           protein F19B10.11 protein.
          Length = 505

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 13  NTKPRSVPGQPVLNHASRLVDGCRFFTSAENEENSIPG 50
           N KP  VP  P L+      + C  +   E+ +  I G
Sbjct: 375 NVKPLVVPSPPELSQVPSFEEACEIYERWEDRDKVIEG 412


>Z93239-2|CAB07529.2| 1218|Caenorhabditis elegans Hypothetical protein
            H03A11.2 protein.
          Length = 1218

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 33   DGCRFFTSAENEENSIPGRGARIVPPGGDTKTQKRRLLRFG-KYEALTPHVE 83
            DG  F    +N+E+ IP R  R++        Q + L   G K++A T H E
Sbjct: 1032 DGQHFEAKTQNQEDFIPRRNERVI---RSVPIQHKILSSEGRKFDAKTVHQE 1080


>Z69660-2|CAD57697.1| 1218|Caenorhabditis elegans Hypothetical protein
            H03A11.2 protein.
          Length = 1218

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 33   DGCRFFTSAENEENSIPGRGARIVPPGGDTKTQKRRLLRFG-KYEALTPHVE 83
            DG  F    +N+E+ IP R  R++        Q + L   G K++A T H E
Sbjct: 1032 DGQHFEAKTQNQEDFIPRRNERVI---RSVPIQHKILSSEGRKFDAKTVHQE 1080


>Z81475-3|CAB03909.1|  303|Caenorhabditis elegans Hypothetical
           protein C24H11.3 protein.
          Length = 303

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 36  RFFTSAENEENSIPGRGARIVPP 58
           R  + +EN ENS P R   + PP
Sbjct: 200 RLSSDSENSENSPPKRSKLVTPP 222


>AF016657-13|AAB93657.1|  274|Caenorhabditis elegans Hypothetical
           protein C16C4.12 protein.
          Length = 274

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 25  LNHASRLVDGCRFFTSAENEEN 46
           + + SR++DG  +FT  EN  N
Sbjct: 140 VKNVSRIIDGSDYFTKIENRFN 161


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.138    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,437
Number of Sequences: 27539
Number of extensions: 97991
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 9
length of query: 101
length of database: 12,573,161
effective HSP length: 70
effective length of query: 31
effective length of database: 10,645,431
effective search space: 330008361
effective search space used: 330008361
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)