GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002371-TA|BGIBMGA002371-PA|IPR009062|Smac/Diablo
         (223 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   1.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.3  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 169 ERIEHANRTCNIQKQLNHDLQQESLELQQRA 199
           E+ EH++R  + Q+Q     QQ+  + QQ++
Sbjct: 78  EQREHSDRVTSQQQQQQQQQQQQDQQQQQQS 108


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 106 EWGEEGTPPHHWDQLVAIRGSLSDLKHNLRTLISYMDYAEKLATVAAEISYLSGNVI 162
           E+         W+  ++   +L+DL +   TL SY    E    +A  I +    +I
Sbjct: 373 EYNNNDLDTKKWNNKISALRALNDLYNVKNTLDSYNGSMEINQNIAQNIDHAKNTII 429


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.131    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,848
Number of Sequences: 429
Number of extensions: 1898
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 223
length of database: 140,377
effective HSP length: 55
effective length of query: 168
effective length of database: 116,782
effective search space: 19619376
effective search space used: 19619376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)