GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002370-TA|BGIBMGA002370-PA|IPR001841|Zinc finger,
RING-type
         (98 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   1.3  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   2.3  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   2.3  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   2.3  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   2.3  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   2.3  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   2.3  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   2.3  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    21   2.3  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   2.3  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     19   7.2  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 1.3
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 35  PAPHHQDEKCTIC 47
           P P  Q+E C +C
Sbjct: 179 PTPRQQEELCLVC 191


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
          protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 29 RHAYARPAPHH 39
          +H YA PAP H
Sbjct: 54 QHPYAAPAPGH 64


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
          protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 29 RHAYARPAPHH 39
          +H YA PAP H
Sbjct: 54 QHPYAAPAPGH 64


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
          protein.
          Length = 230

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 29 RHAYARPAPHH 39
          +H YA PAP H
Sbjct: 54 QHPYAAPAPGH 64


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
          protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 29 RHAYARPAPHH 39
          +H YA PAP H
Sbjct: 54 QHPYAAPAPGH 64


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
          protein.
          Length = 297

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 29 RHAYARPAPHH 39
          +H YA PAP H
Sbjct: 54 QHPYAAPAPGH 64


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
          protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 29 RHAYARPAPHH 39
          +H YA PAP H
Sbjct: 10 QHPYAAPAPGH 20


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 29 RHAYARPAPHH 39
          +H YA PAP H
Sbjct: 54 QHPYAAPAPGH 64


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
          protein.
          Length = 157

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 29 RHAYARPAPHH 39
          +H YA PAP H
Sbjct: 54 QHPYAAPAPGH 64


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
          Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 29 RHAYARPAPHH 39
          +H YA PAP H
Sbjct: 54 QHPYAAPAPGH 64


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 19.4 bits (38), Expect = 7.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 86  VDIETHLSKDAT 97
           +D+  HLS D+T
Sbjct: 120 IDVVNHLSSDST 131


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.330    0.138    0.484 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,393
Number of Sequences: 317
Number of extensions: 770
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 98
length of database: 114,650
effective HSP length: 48
effective length of query: 50
effective length of database: 99,434
effective search space:  4971700
effective search space used:  4971700
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.5 bits)
S2: 37 (19.0 bits)