Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002370-TA|BGIBMGA002370-PA|IPR001841|Zinc finger,
RING-type
(98 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 69 1e-13
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 61 4e-11
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 57 6e-10
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 55 2e-09
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 51 4e-08
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 46 1e-06
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 44 4e-06
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 43 8e-06
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 42 2e-05
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 40 7e-05
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 39 1e-04
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 38 3e-04
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 37 7e-04
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 36 0.001
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 36 0.002
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 35 0.002
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 34 0.005
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 34 0.005
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 33 0.008
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 33 0.008
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.043
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 29 0.13
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.13
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 28 0.23
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 28 0.23
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 0.40
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 0.53
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 25 1.6
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 25 2.1
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 2.8
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce... 24 3.7
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 24 5.0
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 24 5.0
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 23 6.5
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p... 23 8.7
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 23 8.7
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 68.9 bits (161), Expect = 1e-13
Identities = 26/47 (55%), Positives = 38/47 (80%), Gaps = 2/47 (4%)
Query: 41 DEKCTICLSIFEVDSDCRRL-PCMHLFHMECVDQWLSTNKH-CPICR 85
DE+C +CLS FE++ +CRRL C H FH EC+DQWL+++++ CP+CR
Sbjct: 522 DERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCR 568
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 60.9 bits (141), Expect = 4e-11
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 40 QDEKCTICLSIFEVDSDCRRLPCMHLFHMECVDQWLSTNKHCPICRVDIE 89
++ +CTIC+ +F+++ D +LPC H FH C+ WL N C ICR ++
Sbjct: 392 EEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPVD 441
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 56.8 bits (131), Expect = 6e-10
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 31 AYARPAPHHQDEKCTICLSIFEVDSDCRRLP-CMHLFHMECVDQWLST-NKHCPICR 85
AY A + C ICL + CR+L C H FH C+DQWL+T N CP+CR
Sbjct: 753 AYFDDASLSSADSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCR 809
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 54.8 bits (126), Expect = 2e-09
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 40 QDEKCTICLSIFEVDSDCRRLPCMHLFHMECVDQWLSTNK-HCPICRVD 87
+++ C IC + + D R LPC H+FH +C+D W++T K CP+C D
Sbjct: 201 EEDFCIICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNED 249
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 50.8 bits (116), Expect = 4e-08
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 34 RPAPHHQDEKCTICLSIFEVDSDC-RRLPCMHLFHMECVDQWLSTNKH-CPICRVDIETH 91
R + + +CTICL + +S R LPC H+FH C+D +L N CP+C+ + T+
Sbjct: 488 RGSKYFDQRECTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCPLCKQSV-TN 546
Query: 92 LSKDAT 97
+ ++A+
Sbjct: 547 MLENAS 552
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 46.0 bits (104), Expect = 1e-06
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 43 KCTICLSIFEVDSDCRRLPCMHLFHMECVDQWLSTNKH-CPICRVDI 88
+C ICL F LPC H FH C+ +W+ +H CP C ++
Sbjct: 320 ECVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTCNTEV 366
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 44.0 bits (99), Expect = 4e-06
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 53 VDSDCRRLPCMHLFHMECVDQWLSTNKHCPICR 85
+D +RLPC H+ H C+ WL + CPICR
Sbjct: 319 LDMTPKRLPCGHILHFHCLRNWLERQQTCPICR 351
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 43.2 bits (97), Expect = 8e-06
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 61 PCMHLFHMECVDQWLSTNKHCPICR 85
PC HL+H +C+ QW+ T CP+CR
Sbjct: 646 PCHHLYHRQCLLQWMETRSICPVCR 670
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 41.5 bits (93), Expect = 2e-05
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 41 DEKCTICLSIFEVDSD--CRRLPCMHLFHMECVDQWLSTNKHCPICRVDI 88
D C IC + + ++PC H+F C+ +WL + CP+CR ++
Sbjct: 104 DLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEV 153
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 39.9 bits (89), Expect = 7e-05
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 42 EKCTICLSIFEVDSDC---RRLPCMHLFHMECVDQWL--STNKHCPICR 85
E+C IC S+ V+ R C H FH C+ +W S + CP+CR
Sbjct: 1556 EECAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSRCPLCR 1604
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 39.1 bits (87), Expect = 1e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 59 RLPCMHLFHMECVDQWLSTNKHCPICRVD 87
++PC H FH C++ W CP+CR +
Sbjct: 53 KIPCGHYFHNHCLESWCRVANTCPLCRTE 81
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 37.9 bits (84), Expect = 3e-04
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 41 DEKCTICLSIFEVDSDCRRLPCMHLFHMECVDQWLSTNKHCPICR 85
+ KC++C+ + C H+F C++ W S CP+CR
Sbjct: 253 NRKCSLCMEFIHCPAATE---CGHIFCWSCINGWTSKKSECPLCR 294
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 36.7 bits (81), Expect = 7e-04
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 62 CMHLFHMECVDQWLSTNKHCPICRVDIETHLSKDAT 97
C H+FH C+ WL+T+ C +D +T + D+T
Sbjct: 52 CKHIFHAHCIQNWLATSGSQGQCPMDRQTFVVADST 87
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 35.9 bits (79), Expect = 0.001
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 44 CTICLSIFEVD-SDCRRLPCMHLFHMECVDQWLSTNKHCPICR 85
C +CL + + + C H FH C+ +W N CP+CR
Sbjct: 208 CVVCLERMDSSITGLITIVCQHTFHCPCLQKW--GNSSCPVCR 248
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 35.5 bits (78), Expect = 0.002
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 42 EKCTICLSIFEVDSDCRRLP-CMHLFHMECVDQWLSTN-KHCPI 83
++C IC F R+ C+ +FH++C WLST CP+
Sbjct: 228 QECIICFEEFAAGDRVARIEYCLCIFHLKCYRDWLSTGAAGCPV 271
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 35.1 bits (77), Expect = 0.002
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 62 CMHLFHMECVDQWLSTNKHCPI 83
C H FH C+ +WL+T CP+
Sbjct: 74 CNHAFHFHCISRWLNTRNVCPL 95
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 33.9 bits (74), Expect = 0.005
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 62 CMHLFHMECVDQWLSTNKHCPICRVDIETHLS 93
C H + EC+ WL +K CP CR + T S
Sbjct: 100 CGHTYCYECLLNWLKESKSCPTCRQKLYTQPS 131
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 33.9 bits (74), Expect = 0.005
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 26 NTYRHAYARPAPHHQDEKCTICLSIFEVDSDCRRLPCMHLFHMECVDQWLSTNKHCPICR 85
N Y H + H + C IC I + C HL+ C++ WL + CP+C+
Sbjct: 1077 NLYEHIVLKAESH---QICIICRDIIKQGFITT---CGHLYCSFCLEAWLKHSSSCPMCK 1130
Query: 86 VDI 88
+
Sbjct: 1131 TKL 1133
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 33.1 bits (72), Expect = 0.008
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 41 DEKCTICLSIFEVDSD----CRRLPCMHLFHMECVDQWLSTNK--HCPICRVDIE 89
DE C +C DS C+ + H EC+ +WL +K HC +C+ E
Sbjct: 5 DEICRVCRCEGAPDSPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKFE 59
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 33.1 bits (72), Expect = 0.008
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 41 DEKCTICLS-IFEVDSDCRRLPCMHLFHMECVDQWLSTNKHCPIC 84
D C IC +F L C H H C ++++ TN CP C
Sbjct: 268 DCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTC 312
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 30.7 bits (66), Expect = 0.043
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 44 CTICLSIFEVDSDCRRLPCMH-LFHMECVDQWLSTNKHCPICRVDIE 89
C ICL + + PC H F C+ +W+ + CPIC+ ++
Sbjct: 21 CVICLQKDGLRAQLS--PCGHDQFDYSCICRWMDQSLTCPICKRHVD 65
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 29.1 bits (62), Expect = 0.13
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 40 QDEKCTICLSIFEVDSDCRRLPCMHLFHMECVDQWLST-----NKHCPICRVDIETHLSK 94
++++ +C EV D C H F CV ++++ N +CP C + + LS
Sbjct: 704 ENQENIVCKICDEVAQDAIESRCHHTFCRLCVTEYINAAGDGENVNCPSCFIPLSIDLSA 763
Query: 95 DA 96
A
Sbjct: 764 PA 765
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 29.1 bits (62), Expect = 0.13
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 43 KCTICLSIFEVDSDCRRLPCMHLFHMECVDQWLSTNKHCPICR 85
+C IC + D PC H F C+ Q L+ + CP CR
Sbjct: 168 ECQICFGMLY---DPVVSPCGHTFCGPCLMQALTQSPQCPTCR 207
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 28.3 bits (60), Expect = 0.23
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 43 KCTICLSIFEVDSDCRRLPCMHLFHMECVDQWLSTNKHCPICRV-DIETHLSKD 95
+C IC F C H F C+ +L + CP CR + E+ L K+
Sbjct: 28 RCLICHEYFRAPLITS---CSHTFCSFCIRDYLREHPMCPACRAPEQESRLRKN 78
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 28.3 bits (60), Expect = 0.23
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 60 LPCMHLFHMECVDQWLSTNKHCPICRVDIETHL 92
L C H H +W ST+ CP+ D E L
Sbjct: 872 LNCGHGAHASHASEWFSTHTICPVPNCDCECKL 904
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.5 bits (58), Expect = 0.40
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 44 CTIC-LSIFEVDSDCRRLPCMHLFHMECVDQWLS 76
CT C LSI + C C+H+ H +C +W S
Sbjct: 1265 CTFCCLSIHGLCIVCGL--CLHVMHEDCYKEWFS 1296
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 27.1 bits (57), Expect = 0.53
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 43 KCTICLSIFEVDSDCRRL-PCMHLFHMECVDQW 74
+C++C + C H+FH+ C+ +W
Sbjct: 196 ECSVCTDTINPSTSIWSCGTCYHVFHLSCIRKW 228
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 25.4 bits (53), Expect = 1.6
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 43 KCTICLSIFEVDSDCRRLPCMHLFHMECVDQWLSTNK---HCPICR 85
+C ICL PC H +H +C+ L+ + C ICR
Sbjct: 191 ECCICLMPVLPCQALFVAPCSHSYHYKCIRPTLNESHPYFSCFICR 236
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.0 bits (52), Expect = 2.1
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 25 RNTYRHAYARPAPHHQDEKCTICLSIFEVD---SDCRRLPCMHLFHMECVDQWLSTNKHC 81
+ TY H + KC +C E D ++C C + H+ C+ T + C
Sbjct: 161 QKTYDHKLCLRKTISEPVKCNLCYECIESDELRANCPFTDCNSINHLTCLASSFLT-EEC 219
Query: 82 PICRVD 87
+ ++
Sbjct: 220 QVLPIE 225
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 24.6 bits (51), Expect = 2.8
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 39 HQDEKCTICLSIFEVDSDCRRLPCMHLFHMECVDQWLST 77
+Q +C +C +F + C + H +CV + L++
Sbjct: 422 YQIMRCAVCAELFSYSPGLQCENCSFVCHKKCVTKVLAS 460
>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 456
Score = 24.2 bits (50), Expect = 3.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 22 VIDRNTYRHAYARPAP 37
++D NTYRH+ +R P
Sbjct: 109 ILDLNTYRHSISRAHP 124
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 23.8 bits (49), Expect = 5.0
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 39 HQDEKCTICLSIFEVDSDCRRLPCMHLFHMECV 71
++ C +C D + C +HM+CV
Sbjct: 257 NEPSNCKVCKKWCAFDFSVQCADCKKYYHMDCV 289
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 23.8 bits (49), Expect = 5.0
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 66 FHMECVDQWLSTNK 79
FH + +D+W+ST K
Sbjct: 216 FHKQKIDEWVSTKK 229
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 23.4 bits (48), Expect = 6.5
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 70 CVDQ--WLSTNKHCPICRVDIE 89
C+DQ + TN HCP+ IE
Sbjct: 248 CIDQVEQILTNHHCPVVACIIE 269
>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 359
Score = 23.0 bits (47), Expect = 8.7
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 45 TICLSIFEVDSDCRR--LPCMHLFHMECVDQWLSTNKH 80
T+ LSI +DS R + C H+ + CV W+++ H
Sbjct: 149 TLPLSISLMDSYVSRRVVYCKHIQLVACVCLWIASKFH 186
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 23.0 bits (47), Expect = 8.7
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 5/24 (20%)
Query: 62 CMHLFHMECVDQWLSTNKHCPICR 85
C+HL H +C +T CP C+
Sbjct: 809 CLHLVHRDC-----ATETVCPKCK 827
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.330 0.138 0.484
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 390,608
Number of Sequences: 5004
Number of extensions: 13495
Number of successful extensions: 68
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 38
length of query: 98
length of database: 2,362,478
effective HSP length: 62
effective length of query: 36
effective length of database: 2,052,230
effective search space: 73880280
effective search space used: 73880280
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 47 (23.0 bits)
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