GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002370-TA|BGIBMGA002370-PA|IPR001841|Zinc finger,
RING-type
         (98 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T...    25   0.66 
AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/T...    25   0.66 
DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    24   1.2  
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    24   1.2  
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    21   6.1  
AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein p...    21   8.1  

>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1977

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 5/39 (12%)

Query: 37   PHHQDEKCTICLSIFEV---DSDCRRLPCMHLFHMECVD 72
            P H   +CT C ++F +      CR   C  +F  EC D
Sbjct: 1804 PDHAVTRCTTCQTVFWIGLRKHHCR--SCGQIFCAECSD 1840


>AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1978

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 5/39 (12%)

Query: 37   PHHQDEKCTICLSIFEV---DSDCRRLPCMHLFHMECVD 72
            P H   +CT C ++F +      CR   C  +F  EC D
Sbjct: 1805 PDHAVTRCTTCQTVFWIGLRKHHCR--SCGQIFCAECSD 1841


>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 7/53 (13%)

Query: 38  HHQDE----KCTICLSIFEVDSDCRRLPCMHLFHMECVDQWLSTNKHCPICRV 86
           H  DE    KC +C   F VD    +  C H F   C       +  C IC V
Sbjct: 237 HSDDEELPFKCYVCRESF-VDPIVTK--CKHYFCERCALAQYKKSSRCAICGV 286


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 7/53 (13%)

Query: 38  HHQDE----KCTICLSIFEVDSDCRRLPCMHLFHMECVDQWLSTNKHCPICRV 86
           H  DE    KC +C   F VD    +  C H F   C       +  C IC V
Sbjct: 237 HSDDEELPFKCYVCRESF-VDPIVTK--CKHYFCERCALAQYKKSSRCAICGV 286


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 33  ARPAPHHQDEKCTICLSIFEVDSDCR 58
           A P P  + ++C  CL +  + S+CR
Sbjct: 498 APPTPPER-QRCFRCLEMGHIASNCR 522


>AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein
           protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 35  PAPHHQDEKCTICLSIFEVDSDCR 58
           PA + Q ++C  CL    +  +CR
Sbjct: 355 PAINLQQQRCYRCLERGHIARECR 378


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.330    0.138    0.484 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,296
Number of Sequences: 2123
Number of extensions: 3639
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 98
length of database: 516,269
effective HSP length: 55
effective length of query: 43
effective length of database: 399,504
effective search space: 17178672
effective search space used: 17178672
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 42 (21.0 bits)