GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002370-TA|BGIBMGA002370-PA|IPR001841|Zinc finger,
RING-type
         (98 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   1.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   2.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   4.8  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    20   4.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   6.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   6.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   6.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   8.4  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 35  PAPHHQDEKCTIC 47
           P P  Q+E C +C
Sbjct: 178 PTPRQQEELCLVC 190


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 26  NTYRHAYARPAPHH 39
           N   + Y+ P PHH
Sbjct: 403 NLLNNVYSTPGPHH 416


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 4.8
 Identities = 6/23 (26%), Positives = 13/23 (56%)

Query: 71  VDQWLSTNKHCPICRVDIETHLS 93
           VD W+ T     +C + ++ +L+
Sbjct: 144 VDVWMCTASILNLCAISLDRYLA 166


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
          finger domain-Z2 isoform protein.
          Length = 71

 Score = 20.2 bits (40), Expect = 4.8
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 29 RHAYARPAPHHQDEKCTICLSIF 51
          RH   + A   ++ +C IC  ++
Sbjct: 23 RHVADKHAERQEEYRCVICERVY 45


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 60  LPCMHLFHMECVDQWLSTNKH 80
           LP +    + C+D W+    H
Sbjct: 320 LPAVFAKTVSCIDPWIYAINH 340


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 30  HAYARPAPHHQDEKCTICLSIF 51
           H + R     +  KCT+C   F
Sbjct: 164 HRHMRIHTGERPHKCTVCSKTF 185


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 60  LPCMHLFHMECVDQWLSTNKH 80
           LP +    + C+D W+    H
Sbjct: 320 LPAVFAKTVSCIDPWIYAINH 340


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 76   STNKHCPICRVDIE 89
            + NKHC I R  ++
Sbjct: 1682 NVNKHCTIHRTQVK 1695


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.330    0.138    0.484 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,274
Number of Sequences: 429
Number of extensions: 999
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 98
length of database: 140,377
effective HSP length: 49
effective length of query: 49
effective length of database: 119,356
effective search space:  5848444
effective search space used:  5848444
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.9 bits)
S2: 38 (19.4 bits)