GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002369-TA|BGIBMGA002369-PA|IPR001965|Zinc finger,
PHD-type, IPR011011|Zinc finger, FYVE/PHD-type
         (98 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          21   1.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   1.8  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   1.8  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   1.8  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    20   5.4  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    19   7.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    19   7.2  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       19   9.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    19   9.5  

>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 46 EPKCSFQWY-HFQCVGIKVPPPGNWFCPE 73
          + K ++++Y + Q +     PP +W CP+
Sbjct: 28 QEKTTYEYYENNQALPPITYPPSDWNCPQ 56


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 11  EDYEPEEQSQYSPKRESEY 29
           +DYEP     Y P R++ Y
Sbjct: 97  DDYEPSFDLFYYPSRQTLY 115


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
          transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 8/19 (42%), Positives = 9/19 (47%)

Query: 44 CDEPKCSFQWYHFQCVGIK 62
          C EP   F +  F C G K
Sbjct: 8  CGEPAAGFHFGAFTCEGCK 26


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 46 EPKCSFQWY-HFQCVGIKVPPPGNWFCPE 73
          + K ++++Y + Q +     PP +W CP+
Sbjct: 19 QEKTTYEYYENNQALPPITYPPSDWNCPQ 47


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 19.8 bits (39), Expect = 5.4
 Identities = 6/22 (27%), Positives = 13/22 (59%)

Query: 14  EPEEQSQYSPKRESEYCYCGKF 35
           EPE++++  P     + YC ++
Sbjct: 178 EPEKKTESQPMLWPAWVYCTRY 199


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
          protein.
          Length = 311

 Score = 19.4 bits (38), Expect = 7.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 7  LPITEDYEPEEQSQYSPKRESE 28
          L +T    P + S+ SP++ESE
Sbjct: 55 LDVTGTPPPLDCSKNSPEKESE 76


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 19.4 bits (38), Expect = 7.2
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query: 47  PKCSFQWYHF 56
           P  SF+WY F
Sbjct: 260 PSPSFRWYKF 269


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 19.0 bits (37), Expect = 9.5
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 38  ESRMIGCDEPKCSF 51
           ESR++   +P CS+
Sbjct: 397 ESRVLDLSKPGCSY 410


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 19.0 bits (37), Expect = 9.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 6   VLPITEDYEPEEQSQYSPKRES 27
           V P+T   +P E    SP R S
Sbjct: 913 VSPLTSPRQPAETHAGSPCRNS 934


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.141    0.505 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,704
Number of Sequences: 317
Number of extensions: 1273
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 98
length of database: 114,650
effective HSP length: 48
effective length of query: 50
effective length of database: 99,434
effective search space:  4971700
effective search space used:  4971700
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.1 bits)
S2: 37 (19.0 bits)