Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002369-TA|BGIBMGA002369-PA|IPR001965|Zinc finger,
PHD-type, IPR011011|Zinc finger, FYVE/PHD-type
(98 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ... 72 2e-14
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 63 9e-12
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 34 0.004
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 32 0.014
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 32 0.019
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c... 29 0.13
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 29 0.17
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 27 0.40
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 27 0.53
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 26 0.93
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 25 1.6
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas... 25 2.8
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 24 3.7
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 24 3.7
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 24 5.0
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 23 6.5
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 23 6.5
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 23 6.5
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 23 8.7
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 23 8.7
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 23 8.7
>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 305
Score = 71.7 bits (168), Expect = 2e-14
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 17 EQSQYSPKRESEYCYCGKFISESRMIGCDEPKCSFQWYHFQCVGIKVPPPGNWFCPECIK 76
+ S S + E YCYC + +S +MIGCD C +W+H CVG+ PP G W+C EC +
Sbjct: 238 DSSDISREGEQLYCYCQQ-VSYGQMIGCDNENCKREWFHLPCVGLVEPPKGIWYCKECEE 296
Query: 77 LRRKKRRR 84
L + R
Sbjct: 297 LAKSSESR 304
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 62.9 bits (146), Expect = 9e-12
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 28 EYCYCGKFISESRMIGCDEPKCSFQWYHFQCVGIKVPPPGNWFCPEC 74
+YC+C + S +M+ CD C +W+H +CVG+K PP G W+C C
Sbjct: 229 KYCFCQQG-SYGQMVACDNANCEREWFHMECVGLKAPPEGTWYCEAC 274
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 34.3 bits (75), Expect = 0.004
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 10/51 (19%)
Query: 29 YCYCGKFISESRMIGCDEPKCSFQWYHFQCVGIKVPPPGN-----WFCPEC 74
YC C K S M+GCD C W+H CV I P N +FCP+C
Sbjct: 120 YCICQKPDDGSWMLGCD--GCE-DWFHGTCVNI--PESYNDLTVQYFCPKC 165
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 32.3 bits (70), Expect = 0.014
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 22 SPKRESEYCYCGK-FISESRMIGCDEPKCSFQWYHFQCVGIK---VPPPGNWFCPEC 74
S + S C C + F + C C +W+H++CVG+ V N+ CP+C
Sbjct: 1449 SDQNASVICLCRQPFAISDGTVQCHN--C-LEWFHYECVGLSSDIVSTLSNYACPDC 1502
Score = 23.8 bits (49), Expect = 5.0
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 61 IKVPPPGNWFCP 72
++V PP NW CP
Sbjct: 113 VRVIPPDNWKCP 124
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 31.9 bits (69), Expect = 0.019
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 37 SESRMIGCDEPKCSFQWYHFQCVGIKVPPPGNWFCPECI 75
+ + ++ CD S H C GI P G WFC +C+
Sbjct: 207 NSNAIVFCDNCNTSV---HQNCYGIPFVPEGQWFCKKCL 242
>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 29.1 bits (62), Expect = 0.13
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 30 CYCGKFISESRMIGCDEPKCSFQWYHFQCVGIKVPP--PGNWFCP--ECIKLRRKKRRRP 85
CY K + E + DEP F + F +G + PG WF P C + R + P
Sbjct: 90 CYPEKQLKEILALFADEPSAPFSIHQFVTMGKTLCDINPGQWFGPTTSCSCVARLSDQNP 149
Query: 86 E 86
+
Sbjct: 150 D 150
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 28.7 bits (61), Expect = 0.17
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 38 ESRMIGCDEPKCSF-QWYHFQCVGIKV--PPPGNWFCPECIKLRRKKR 82
++R++ CD F Q H + ++ P G WFC +CI RRKK+
Sbjct: 246 KNRIVFCDGCNTPFHQLCHEPYISDELLDSPNGEWFCDDCI--RRKKQ 291
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 27.5 bits (58), Expect = 0.40
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 32 CGKFISESRMIGCDEPKCSFQWYHFQCVGIKVPPPGNWFCPECIKL 77
CG+ ++ CD C YH C+ + P ++CP C+ L
Sbjct: 128 CGRSDHAEVLLLCDG--CD-DAYHTYCLNMDAVPIEEFYCPNCVLL 170
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 27.1 bits (57), Expect = 0.53
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 31 YCGKFISESRMIGCDEPKCSFQWYHFQCVGIKVPPP----GNWFCPEC 74
YC I C+ CSF H C+ + P G+WFC C
Sbjct: 119 YCSACGGRGLFICCEGCPCSF---HLSCLEPPLTPENIPEGSWFCVTC 163
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 26.2 bits (55), Expect = 0.93
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 9 ITEDYEPEEQSQYSPKRESEYCYCG-KFISESRMIGCDEPKCSFQWYH 55
+T Y P E +CYCG KF ++ ++ D+ ++ H
Sbjct: 76 VTNSYNAMVMDLLGPSLEDLFCYCGRKFTLKTVLLLADQLISRIEYVH 123
>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 1.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 70 FCPECIKLRRKKRRRPEFLSEHKW 93
F C+K K R E+LS+HK+
Sbjct: 234 FVSNCLKKNPKDRATAEYLSKHKF 257
>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
PP1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 24.6 bits (51), Expect = 2.8
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 31 YCGKFISESRMIGCDEP-KCSFQ 52
YCG+F + M+ DE CSFQ
Sbjct: 271 YCGEFDNAGAMMSVDESLLCSFQ 293
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 24.2 bits (50), Expect = 3.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 44 CDEPKCSFQWYHFQC 58
C+ K SF+W+ F C
Sbjct: 329 CEHYKKSFRWFRFSC 343
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 24.2 bits (50), Expect = 3.7
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 64 PPPGNWFCPEC 74
P PG+W CP C
Sbjct: 342 PRPGDWNCPMC 352
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 23.8 bits (49), Expect = 5.0
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 35 FISESRMIGCDEPKCSF 51
F+ E R+ G D P C F
Sbjct: 140 FVREQRLAGMDVPTCEF 156
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 23.4 bits (48), Expect = 6.5
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 26 ESEYCYCGKFISESRMIGCDEPKCS--FQWYHFQCV 59
++ YCYCGK R + + +CS +H C+
Sbjct: 39 QNTYCYCGK----DRNLRFPDLQCSVCLNMFHLSCL 70
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 23.4 bits (48), Expect = 6.5
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 69 WFCPECIKLRRKKRRRPE 86
W+ +C+K+ +KK R+ E
Sbjct: 1118 WYHAKCLKMSKKKLRQDE 1135
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 23.4 bits (48), Expect = 6.5
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 35 FISESRMIGCDEPK 48
+ S+S+MIGC +P+
Sbjct: 552 YTSDSKMIGCTQPR 565
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 23.0 bits (47), Expect = 8.7
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 8 PITEDYEPEEQSQYSPKRESEYCYCGKFISESRMI 42
P ED + EE + + K S Y Y F+ S +
Sbjct: 191 PANEDLDMEEAAIENSKISSSYAYKPSFVLASSQL 225
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 23.0 bits (47), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 1 MHVCHVLPITEDYEPEEQSQYSPKR 25
MHV + + I EP EQ+ Y PK+
Sbjct: 233 MHVPNDVGINLSEEPGEQTCYIPKK 257
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 23.0 bits (47), Expect = 8.7
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 76 KLRRKKRRRPEFLSEHKWGHV 96
KL K + EF+ H WG V
Sbjct: 253 KLENKTNFKSEFILYHDWGSV 273
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.324 0.141 0.505
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 539,985
Number of Sequences: 5004
Number of extensions: 20434
Number of successful extensions: 45
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 24
length of query: 98
length of database: 2,362,478
effective HSP length: 62
effective length of query: 36
effective length of database: 2,052,230
effective search space: 73880280
effective search space used: 73880280
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 47 (23.0 bits)
- SilkBase 1999-2023 -