GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002369-TA|BGIBMGA002369-PA|IPR001965|Zinc finger,
PHD-type, IPR011011|Zinc finger, FYVE/PHD-type
         (98 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF487536-1|AAL93297.1|  504|Anopheles gambiae cytochrome P450 CY...    23   1.5  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    22   4.6  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    22   4.6  
AY062206-1|AAL58567.1|  193|Anopheles gambiae cytochrome P450 CY...    22   4.6  
AF487780-1|AAL96667.1|  490|Anopheles gambiae cytochrome P450 CY...    21   8.1  

>AF487536-1|AAL93297.1|  504|Anopheles gambiae cytochrome P450
           CYP6Y1 protein.
          Length = 504

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/24 (41%), Positives = 10/24 (41%)

Query: 8   PITEDYEPEEQSQYSPKRESEYCY 31
           P  E Y PE  S     R   YCY
Sbjct: 414 PEPEQYRPERFSPDEVARRDPYCY 437


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 30  CYCGKFISESRMIGCDEPKCSFQWYHFQCV 59
           C+C +FI+E   +  D  K    W +   V
Sbjct: 474 CFCVRFIAEHTKMLEDSTKVKEDWKYVAMV 503


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 30  CYCGKFISESRMIGCDEPKCSFQWYHFQCV 59
           C+C +FI+E   +  D  K    W +   V
Sbjct: 474 CFCVRFIAEHTKMLEDSTKVKEDWKYVAMV 503


>AY062206-1|AAL58567.1|  193|Anopheles gambiae cytochrome P450
           CYP4H24 protein.
          Length = 193

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/38 (31%), Positives = 16/38 (42%)

Query: 6   VLPITEDYEPEEQSQYSPKRESEYCYCGKFISESRMIG 43
           V P  E ++PE  S  + +R   Y Y    I     IG
Sbjct: 104 VYPDPERFDPERFSDGNTQRRGPYDYIPFSIGSRNCIG 141


>AF487780-1|AAL96667.1|  490|Anopheles gambiae cytochrome P450
           CYP6Z2 protein protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 67  GNWFCPECIKLRRKKRRRPEFL 88
           G + CP  +KL R    +PE +
Sbjct: 220 GVFICPGLLKLTRMTSLQPELI 241


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.324    0.141    0.505 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,232
Number of Sequences: 2123
Number of extensions: 4968
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 98
length of database: 516,269
effective HSP length: 55
effective length of query: 43
effective length of database: 399,504
effective search space: 17178672
effective search space used: 17178672
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 42 (21.0 bits)