GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002369-TA|BGIBMGA002369-PA|IPR001965|Zinc finger,
PHD-type, IPR011011|Zinc finger, FYVE/PHD-type
         (98 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   2.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   6.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    19   8.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    19   8.4  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 10  TEDYEPEEQSQYSPKRESEY 29
           T D   EE+ +YSP  + E+
Sbjct: 347 TADVLQEEEEEYSPSVQHEF 366


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 23  PKRESEYCYCGKFISESRMIGCDEPKCSFQWYHFQCV 59
           P    + C C +FI+E   +  D  K    W +   V
Sbjct: 481 PPEIHKSCICVRFIAEHTKMLEDSTKVKEDWKYVAMV 517


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 23  PKRESEYCYCGKFISESRMIGCDEPKCSFQWYHFQCV 59
           P    + C C +FI+E   +  D  K    W +   V
Sbjct: 481 PPEIHKSCICVRFIAEHTKMLEDSTKVKEDWKYVAMV 517


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 12  DYEPEEQSQYSPKRESEYCYCGKFISESRM 41
           D  P   S    + ESE+     F+SE+++
Sbjct: 271 DRPPASASSNEHEAESEHTSTPNFLSEAKI 300


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 28  EYCYCGKFISESRMIGCDEPKCSFQWYHFQCVGIKVPPP 66
           E+ Y GKF  E  ++G    K      ++ C  +    P
Sbjct: 417 EHRYQGKFFDEELILGELSEKLREDVINYNCRSLVASVP 455


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 28  EYCYCGKFISESRMIGCDEPKCSFQWYHFQCVGIKVPPP 66
           E+ Y GKF  E  ++G    K      ++ C  +    P
Sbjct: 385 EHRYQGKFFDEELILGELSEKLREDVINYNCRSLVASVP 423


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.141    0.505 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,505
Number of Sequences: 429
Number of extensions: 1669
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 98
length of database: 140,377
effective HSP length: 49
effective length of query: 49
effective length of database: 119,356
effective search space:  5848444
effective search space used:  5848444
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.6 bits)
S2: 38 (19.4 bits)