GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002368-TA|BGIBMGA002368-PA|IPR000215|Proteinase
inhibitor I4, serpin
         (119 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      42   1e-04
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      32   0.14 
SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)                       28   2.4  
SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)           27   4.1  
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)                 27   4.1  
SB_11780| Best HMM Match : UPF0058 (HMM E-Value=0.32)                  27   4.1  
SB_9791| Best HMM Match : Herpes_teg_N (HMM E-Value=1.9)               27   4.1  
SB_14023| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_4305| Best HMM Match : ENT (HMM E-Value=5.2)                        27   5.4  
SB_17380| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  
SB_48651| Best HMM Match : ABC_tran (HMM E-Value=2.1e-24)              26   9.5  
SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)                   26   9.5  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 8/117 (6%)

Query: 4   QNKNENIALSPTGIAGLLAMTLLGSVGSTYDELATSLGFSQDILANRNHHEQFGELLQQL 63
           Q+   N+  SP  I   LAMT LG+ G+T  ++  +  F  D+       E+F + LQ L
Sbjct: 24  QDGQTNLFYSPASIVVALAMTYLGARGNTATQMTKTFHFPTDV------PEKFHDFLQAL 77

Query: 64  N-DNETNSKTLYADAMFVDSQTRIRSVFKDYLTTVYHGEARGVNFTQ-KNEVKQMIN 118
           N  N   ++ L A+ +F      I   FK      +  E   V++ +  N  +  +N
Sbjct: 78  NASNSDGNQILMANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVN 134


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 1/98 (1%)

Query: 23  MTLLGSVGSTYDELATSLGFSQDILANRNHHEQFGELLQQLNDNETNSKTLYADAMFVDS 82
           M   G+ G T DE+AT++ +        + H++  EL   LN+    ++   A+ +F+  
Sbjct: 1   MVYAGARGETADEMATAMHWEGHKPMLPSKHQEHKELSVALNNPGATNEMSIANNLFLQK 60

Query: 83  QTRIRSVFKDYLTTVYHGEARGVNF-TQKNEVKQMINE 119
              I   F D     Y  +   V++ T     ++ +N+
Sbjct: 61  DFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQ 98


>SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)
          Length = 1167

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 44  QDILANRNHHEQF----GELLQQLNDNETNSKTLYADAMFVDSQ 83
           QD L     H  F    G+LL+ L   +   KT+Y D M  D Q
Sbjct: 518 QDRLIQNRIHRAFRRAEGQLLKALKARKGEVKTMYGDLMLADGQ 561


>SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)
          Length = 650

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 44 QDILANRNHHEQFGELLQQLN-DNETNSKTLYADAMFVDS 82
          QD++ NR+H+  F +L+ +L    + NS  ++  +   DS
Sbjct: 50 QDVINNRSHYPAFDQLMSELQVQRDENSPGIWTSSNQDDS 89


>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
          Length = 1273

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 44  QDILANRNHHEQFGELLQQLN-DNETNSKTLYADAMFVDS 82
           QD++ NR+H+  F +L+ +L    + NS  ++  +   DS
Sbjct: 818 QDVINNRSHYPAFDQLMSELQVQRDENSPGIWTSSNQDDS 857


>SB_11780| Best HMM Match : UPF0058 (HMM E-Value=0.32)
          Length = 788

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 53  HEQFGELLQQLNDNETNSKTLYADAMFVDSQTRIRSVFKDYLTTVYHGEARG 104
           H +  E++ +LN+N  N K + ++++  D + R++++       VY   A+G
Sbjct: 617 HAEGQEIMLKLNENNFNEKFVLSESVRRDKEERLKAIIT--TEGVYFVRAKG 666


>SB_9791| Best HMM Match : Herpes_teg_N (HMM E-Value=1.9)
          Length = 237

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 5   NKNENIALSPTGIAGLLAMTLLGSVGSTYDELATSLGFSQD 45
           N+N+N    P G A LL    + SVG       +S GFS +
Sbjct: 173 NRNQNGFRHPNGKAVLLEFKTIRSVGCYIRRFVSSNGFSDE 213


>SB_14023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 29 VGSTYDEL-ATSLGFSQDILANRN--HHEQFGELLQQLNDNETNSKTLYADAMFVDSQTR 85
          +  T+D L  T L +S DI   R     +    + +Q   +ET S +L+  +   +  TR
Sbjct: 1  MNETFDRLYRTFLRYSDDIRFIRETISPKSRSSVRRQYRSSETRSFSLFLKSFIAEVNTR 60

Query: 86 IRSVFKDY 93
           R  F D+
Sbjct: 61 RRERFSDF 68


>SB_4305| Best HMM Match : ENT (HMM E-Value=5.2)
          Length = 242

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 63  LNDNETNSKTLYADAMFVDSQTRIRSVFKDYLTTVYHGEARG-VNFTQKNEVKQMINE 119
           L D E  +    A  +     + +R  F+D L T+Y G+  G V  T+K +++Q++ +
Sbjct: 7   LLDAERENYLRLAQLLVEGGTSALRKQFEDGLVTLYPGKTLGEVLKTKKGQLQQLMTK 64


>SB_17380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 35  ELATSLGFSQDILANRNHHEQFGELLQQLNDNETNSKTLYADAMFVDSQTRIRSVFKDYL 94
           ELA SL  +++ +A+ N  +    LLQ   D E     L       DS + I+++  +  
Sbjct: 214 ELANSLK-NKEAIASHNGVDALVSLLQHTGDEEVVDSVLRTVKTLSDSNSEIQTIVGNNK 272

Query: 95  TTV 97
           T++
Sbjct: 273 TSI 275


>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3511

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 26  LGSVGSTYDELATSLGFSQDILANRNHH--EQFGELLQQLNDNETNSKTLYA 75
           +  + S +D+++  +G  +D    R H   +Q  E+ QQL DN+    T+ A
Sbjct: 714 ISGIASIWDQVSLDIGPYKD----RGHFRLKQTDEVFQQLEDNQVTLSTMKA 761


>SB_48651| Best HMM Match : ABC_tran (HMM E-Value=2.1e-24)
          Length = 569

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 42  FSQDILANRNHHEQFGELLQQLN-DNETNSKTLYADAMFVDSQTRIRSVFK 91
           +SQ +LA+RN     G   Q+LN D      ++ A  + + + TRI+  FK
Sbjct: 456 YSQALLASRNSSNSTGPPPQELNQDMYLAVYSVLALGLIILAMTRIQLFFK 506


>SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)
          Length = 648

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 16/55 (29%), Positives = 24/55 (43%)

Query: 3   EQNKNENIALSPTGIAGLLAMTLLGSVGSTYDELATSLGFSQDILANRNHHEQFG 57
           EQ   E+I    + +A L + T LGS  +   +L         +LA  + H  FG
Sbjct: 176 EQQDEESIGQIVSYLANLPSPTTLGSTKTYLCKLCLGFRIYTHLLAKTDFHSYFG 230


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.129    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,423,549
Number of Sequences: 59808
Number of extensions: 117696
Number of successful extensions: 193
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 13
length of query: 119
length of database: 16,821,457
effective HSP length: 73
effective length of query: 46
effective length of database: 12,455,473
effective search space: 572951758
effective search space used: 572951758
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)