GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002367-TA|BGIBMGA002367-PA|undefined
         (195 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    32   0.049
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   1.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   4.2  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.7  

>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 32.3 bits (70), Expect = 0.049
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 96  LHCLITPLQFIAAHDRIINAWGHTSPAWQLCI-TW-TTHDTHAAFKLSLDSPQTSSSTGD 153
           ++C      F A   +I++  G T+   QL + +W T H  H     +L +P+   STG 
Sbjct: 229 INCQADARSFYAERSKIVHVAGLTNDVTQLELESWFTNHGVHPVALWTLKTPEPYKSTGT 288

Query: 154 NHAAFSS 160
               F+S
Sbjct: 289 GFVLFAS 295


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
            Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 36   WKIFPFVVKPSKLRIKNFGYHNPRILADKSTSLTVVPQQASIAAG 80
            W+++ +     K R K+   +N  I+AD   SL V  +  +I  G
Sbjct: 996  WEVWMYSQSEKKHRCKSLKMYNSLIIADPGPSLAVSDRCVAIVLG 1040


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 113 INAWGHTSPAWQLCITWTTHDTHAAFKLSLDSPQTSSSTGDNHAAFSSVSNHCKLRTALA 172
           +NAW     ++  C+T    +  A  K  L   +TSS        F  +    ++RT+++
Sbjct: 533 VNAWNSLETSYYNCMTVLEDEVIAQLKSLLQYSKTSSQMFTTLMRFQPLFFRTRVRTSIS 592


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 130 TTHDTHAAFKLSLDSPQTSSSTGDNHAAFSSVSN 163
           TTHD  AA   +  +  ++++T ++HA    + N
Sbjct: 255 TTHDQAAATTTAAVASASTTATAESHAVADGIMN 288


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.129    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 853,298
Number of Sequences: 5004
Number of extensions: 33853
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 4
length of query: 195
length of database: 2,362,478
effective HSP length: 69
effective length of query: 126
effective length of database: 2,017,202
effective search space: 254167452
effective search space used: 254167452
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)