GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002367-TA|BGIBMGA002367-PA|undefined
         (195 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1763 - 29316969-29318120                                         27   10.0 
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460...    27   10.0 

>07_03_1763 - 29316969-29318120
          Length = 383

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 127 ITWTTHDTHAAFKLSLDSPQTSSSTGDNHAAFSSVSNHCKLR 168
           +++  H     F +S+     S S G N   FS  + HC+ R
Sbjct: 190 VSYAVHPDQRTFFVSVKEAFCSRSDGGNKGTFSFDTKHCEWR 231


>04_04_0799 +
           28143878-28145042,28145127-28145290,28146008-28146070,
           28146268-28146491,28146850-28147555
          Length = 773

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 58  PRILADKSTSLTVVPQQASIAAGPSQPTHRASWSY 92
           P+  A+     T  PQ+ +  A P  P   +SW++
Sbjct: 188 PQYYANGGVPATAAPQRMAAPAPPRSPPRESSWAF 222


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.129    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,512,420
Number of Sequences: 37544
Number of extensions: 221929
Number of successful extensions: 470
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 468
Number of HSP's gapped (non-prelim): 2
length of query: 195
length of database: 14,793,348
effective HSP length: 78
effective length of query: 117
effective length of database: 11,864,916
effective search space: 1388195172
effective search space used: 1388195172
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)