GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002367-TA|BGIBMGA002367-PA|undefined
         (195 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D13969-1|BAA03074.1|  344|Homo sapiens Mel-18 protein protein.         31   2.0  
BC024255-1|AAH24255.1|  344|Homo sapiens polycomb group ring fin...    31   2.0  
BC004858-1|AAH04858.1|  344|Homo sapiens polycomb group ring fin...    31   2.0  

>D13969-1|BAA03074.1|  344|Homo sapiens Mel-18 protein protein.
          Length = 344

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 11  DKAQIYKFRRTTFGPSVYRAISPARWKIFPFVVKPSKLRIKNFGYHNPRILADKSTSLTV 70
           D A IY +RR    P  YR + PA  ++    V          G      ++DK+ S   
Sbjct: 210 DIAYIYPWRRNGPLPLKYR-VQPACKRLTLATVPTPSEGTNTSGASECESVSDKAPSPAT 268

Query: 71  VPQQASIAAGPSQPTHRASWSYG 93
           +P  +S    P+ P+H +  S+G
Sbjct: 269 LPATSSSLPSPATPSHGSPSSHG 291


>BC024255-1|AAH24255.1|  344|Homo sapiens polycomb group ring finger
           2 protein.
          Length = 344

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 11  DKAQIYKFRRTTFGPSVYRAISPARWKIFPFVVKPSKLRIKNFGYHNPRILADKSTSLTV 70
           D A IY +RR    P  YR + PA  ++    V          G      ++DK+ S   
Sbjct: 210 DIAYIYPWRRNGPLPLKYR-VQPACKRLTLATVPTPSEGTNTSGASECESVSDKAPSPAT 268

Query: 71  VPQQASIAAGPSQPTHRASWSYG 93
           +P  +S    P+ P+H +  S+G
Sbjct: 269 LPATSSSLPSPATPSHGSPSSHG 291


>BC004858-1|AAH04858.1|  344|Homo sapiens polycomb group ring finger
           2 protein.
          Length = 344

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 11  DKAQIYKFRRTTFGPSVYRAISPARWKIFPFVVKPSKLRIKNFGYHNPRILADKSTSLTV 70
           D A IY +RR    P  YR + PA  ++    V          G      ++DK+ S   
Sbjct: 210 DIAYIYPWRRNGPLPLKYR-VQPACKRLTLATVPTPSEGTNTSGASECESVSDKAPSPAT 268

Query: 71  VPQQASIAAGPSQPTHRASWSYG 93
           +P  +S    P+ P+H +  S+G
Sbjct: 269 LPATSSSLPSPATPSHGSPSSHG 291


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.321    0.129    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,118,431
Number of Sequences: 224733
Number of extensions: 1146185
Number of successful extensions: 2081
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2081
Number of HSP's gapped (non-prelim): 3
length of query: 195
length of database: 73,234,838
effective HSP length: 86
effective length of query: 109
effective length of database: 53,907,800
effective search space: 5875950200
effective search space used: 5875950200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)