GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002367-TA|BGIBMGA002367-PA|undefined
         (195 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81110-3|CAB03260.1|  949|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AC024214-18|AAF36083.1|  211|Caenorhabditis elegans Nuclear pore...    27   8.8  
AC024214-17|AAF36082.1|  313|Caenorhabditis elegans Nuclear pore...    27   8.8  

>Z81110-3|CAB03260.1|  949|Caenorhabditis elegans Hypothetical
           protein T01D3.3b protein.
          Length = 949

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 60  ILADKSTSLTVVPQQASIAAGPSQPTHRASWSYGTQLHC 98
           IL    +  ++ P  AS+ A  S P  R  WS    LHC
Sbjct: 478 ILPQLCSRKSIPPSTASVPASQSCPDPRKEWSQCGALHC 516


>Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical
           protein T01D3.3a protein.
          Length = 802

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 60  ILADKSTSLTVVPQQASIAAGPSQPTHRASWSYGTQLHC 98
           IL    +  ++ P  AS+ A  S P  R  WS    LHC
Sbjct: 331 ILPQLCSRKSIPPSTASVPASQSCPDPRKEWSQCGALHC 369


>Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical
           protein C33A12.11 protein.
          Length = 336

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 124 QLCI-TWTTHDTHAAFKLSLDSPQTSSSTGDNHAAFSSVS 162
           Q C+ TW  + TH AF+ S +S  T  ST        +VS
Sbjct: 297 QACVVTWLFYLTHPAFRNSTNSVDTVFSTSSQRRTQRTVS 336


>Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical
           protein F36G3.1 protein.
          Length = 964

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 143 DSPQTSSSTGDNHAAFSSVSNH 164
           D  +TSS+T DN+  FS  S H
Sbjct: 484 DEVETSSTTADNNIPFSDCSTH 505


>AC024214-18|AAF36083.1|  211|Caenorhabditis elegans Nuclear pore
           complex protein protein20, isoform b protein.
          Length = 211

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 80  GPSQPTHRASWSYGTQLHCLITPLQFIAAHDRIINAWGHTSPAWQLCITWTTHD 133
           G S P  + SW+     H     L   A++D+ +  W      WQ    W  H+
Sbjct: 56  GHSGPVWKVSWA-----HPKYGGLLASASYDKKVIIWNEQQGRWQKAYEWAAHE 104


>AC024214-17|AAF36082.1|  313|Caenorhabditis elegans Nuclear pore
           complex protein protein20, isoform a protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 80  GPSQPTHRASWSYGTQLHCLITPLQFIAAHDRIINAWGHTSPAWQLCITWTTHD 133
           G S P  + SW+     H     L   A++D+ +  W      WQ    W  H+
Sbjct: 56  GHSGPVWKVSWA-----HPKYGGLLASASYDKKVIIWNEQQGRWQKAYEWAAHE 104


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.129    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,556,200
Number of Sequences: 27539
Number of extensions: 180335
Number of successful extensions: 360
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 6
length of query: 195
length of database: 12,573,161
effective HSP length: 78
effective length of query: 117
effective length of database: 10,425,119
effective search space: 1219738923
effective search space used: 1219738923
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)