GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002366-TA|BGIBMGA002366-PA|undefined
         (328 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb...    32   0.097
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    30   0.52 
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   2.8  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    27   3.7  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   6.4  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    26   8.5  
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    26   8.5  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    26   8.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   8.5  

>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 450

 Score = 32.3 bits (70), Expect = 0.097
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 31 WNLGTYSSIEVETPHVKSTHFVEPNDRTSCFTSPK 65
          W    Y+ IE ETPH     F E  DR   FTSP+
Sbjct: 38 WGKRFYAPIETETPHKVGVEFEESKDR--IFTSPQ 70


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 219 GNYANIRIESQNVGSEKFLTPNQQSSCTASFAFPMTPGGVIEANVYVDHTSNLDHVIILV 278
           G Y +  ++S   G+ K+L   Q    +A  AFP      ++A   +D T+  ++ I+  
Sbjct: 122 GFYRSSYVDSD--GNTKYLATTQMEPTSARRAFPCWDEPALKATFTIDITAKENYTILSN 179

Query: 279 KNLVSNGV-DTVAGFQIFEPSRAS-FVTGWSVIRI 311
            N V   V D +   +  E  R S ++  W V  +
Sbjct: 180 MNAVEETVKDGLKTARFAETCRMSTYLLAWIVAEL 214


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 36  YSSIEVETPHVKSTHFV--EPNDRTSCFTSPKIQMENGGRLEINVFVDSVVGRDISLSVV 93
           +SS ++    ++  + +  EP D T  F S  I  +N G +        +  RD+  S++
Sbjct: 700 HSSYQISNLFLEEDYAILSEPIDNTVFFASEAISQKNSGSIRGAFDSGILAARDVLASLI 759

Query: 94  VSENVPNGVDSIVAVSNLPQ 113
            +  +PN   ++V   NL Q
Sbjct: 760 GNVVLPN---TLVIEENLEQ 776


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 44  PHVKSTHFVEPNDRTSCFTSPKIQMENGGRLEINVFVDSVV 84
           P++K TH V    R SC  SP++    G    + +++DS V
Sbjct: 378 PNIKITHTVRTVLRFSCENSPELM---GSAKYLEIYIDSPV 415


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 4/116 (3%)

Query: 185 NDVEECITFNFEENTEKLFDDNNYLCDGFVPWNIGNYANIRIESQN-VGS--EKFLTPNQ 241
           NDV+    FN ++  +   D N+      VP    +  +  ++ ++ V S   +F    Q
Sbjct: 279 NDVDVDEIFNRQQLNQPALDLNDANSSNSVPVEFNSLHSQNVDYRDEVDSLRPQFNVDEQ 338

Query: 242 QSSCTASFAFP-MTPGGVIEANVYVDHTSNLDHVIILVKNLVSNGVDTVAGFQIFE 296
            S   +S A   +  G V +AN      + +DH  I+V N   NG +     ++ E
Sbjct: 339 SSISHSSNASENIVDGAVTQANGIESDFTRVDHEPIIVNNDDENGNNESENEEVIE 394


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/64 (21%), Positives = 27/64 (42%)

Query: 50  HFVEPNDRTSCFTSPKIQMENGGRLEINVFVDSVVGRDISLSVVVSENVPNGVDSIVAVS 109
           H +      +C T       + G L  N++  S+ G D  +S+ V ++V   +   V + 
Sbjct: 867 HKIMKKTNMNCLTPDASLRGDCGFLSANLYACSIFGEDALMSLSVEKSVSGPISGHVRIR 926

Query: 110 NLPQ 113
           +  Q
Sbjct: 927 SKTQ 930


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 27  PFPIWNLGTYSSIEVETPHVKSTHFVEPNDRTSCFTSPKIQMENG 71
           P+ ++   TY S E+ TP +   +F++  +R    T  K QM NG
Sbjct: 163 PYLMYYGPTYLSWELSTPFLNIHYFLDKTNR----TGSKFQMING 203


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 215 PWNIGNYANIRIESQNVGSEKFLTPNQQSSCTASFAFPMTP---GGVIEANVYVDHTSNL 271
           P  IG+Y +I + +Q + + +    +++SSC       +      G++E +V +D   + 
Sbjct: 321 PGKIGHYIHIFVNTQPISAFERTLSSKRSSCEYDHFLLLVEWHHDGIVE-HVPLDDHMDA 379

Query: 272 DHVIILV 278
            H+++L+
Sbjct: 380 QHLLLLI 386


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 215 PWNIGNYANIRIESQNVGSEKFLTPNQQSSCTASFAFPMTPGGVIEANVYVDHTSNLDHV 274
           P ++  Y   R  S+++ SEK  +          FA    PG  IE+NV +   SN  H 
Sbjct: 812 PRHLHRYVG-RSASESLTSEKDESIKSMKGID-DFANLEIPGKGIESNVVIKDISNQTHE 869

Query: 275 IILVKNLVSNGVDTVA 290
           I    N V N  +TV+
Sbjct: 870 I----NSVENKAETVS 881


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,544,271
Number of Sequences: 5004
Number of extensions: 64622
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 9
length of query: 328
length of database: 2,362,478
effective HSP length: 73
effective length of query: 255
effective length of database: 1,997,186
effective search space: 509282430
effective search space used: 509282430
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)