GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002366-TA|BGIBMGA002366-PA|undefined
         (328 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25...    31   1.3  
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23...    31   1.3  
04_03_0574 - 17338777-17339077,17339390-17340222,17340304-173407...    30   2.2  

>12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-250315,
            250429-250556,250764-250862,250953-251061,251301-251380,
            251464-251691,251768-251833,251970-252086,252538-252735,
            252847-252963,253056-253115,253228-253314,253419-253502,
            253623-253757,253837-253899,253979-254083,254174-254286,
            254374-254626,254715-254851,254970-255248,255352-256354,
            256450-256935,257023-257193,257285-257470,257820-257942,
            258024-258134,258225-258395
          Length = 1708

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 252  PMTPGGVIEANVYVDHTSNLDHVIIL--VKNLVSNGVDTVAGFQIFEPSRA--SFVTGWS 307
            P   G +I A   +D  S+++  I++  V NL + G D +   +++E ++   +F++ W+
Sbjct: 1181 PKVDGELIFAYAKIDRLSDIEEFILMPNVANLQNVG-DRLYDEELYEAAKIIYAFISNWA 1239

Query: 308  VIRIPIANLIPFNGYVSINSK 328
             + + +  L  F G V    K
Sbjct: 1240 KLAVTLVKLKQFQGAVDAARK 1260


>11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-234912,
            235048-235175,235383-235481,235572-235680,235920-235999,
            236083-236310,236387-236452,236589-236705,237142-237339,
            237451-237567,237660-237719,237832-237918,238023-238106,
            238233-238367,238446-238508,238588-238692,238781-238893,
            238981-239233,239322-239458,239577-239855,239958-240960,
            241054-241539,241627-241797,241890-242075,242426-242548,
            242630-242740,242834-243004
          Length = 1708

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 252  PMTPGGVIEANVYVDHTSNLDHVIIL--VKNLVSNGVDTVAGFQIFEPSRA--SFVTGWS 307
            P   G +I A   +D  S+++  I++  V NL + G D +   +++E ++   +F++ W+
Sbjct: 1181 PKVDGELIFAYAKIDRLSDIEEFILMPNVANLQNVG-DRLYDEELYEAAKIIYAFISNWA 1239

Query: 308  VIRIPIANLIPFNGYVSINSK 328
             + + +  L  F G V    K
Sbjct: 1240 KLAVTLVKLKQFQGAVDAARK 1260


>04_03_0574 -
           17338777-17339077,17339390-17340222,17340304-17340765,
           17340843-17341030,17341244-17341576,17341665-17341796,
           17342604-17342643
          Length = 762

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 69  ENGGRLEINVFVDSVVGRDISLSVVVSENVPNGVDSIVAVSNLPQSTTPGWH 120
           E G RL+    V+ +   + S++ +V E V    + ++A  N+P+ TTP  H
Sbjct: 298 ERGARLKAEFKVEVIQELEASMNAMVEERV----NKVLADMNIPRGTTPAVH 345


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.136    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,365,036
Number of Sequences: 37544
Number of extensions: 371518
Number of successful extensions: 735
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 735
Number of HSP's gapped (non-prelim): 3
length of query: 328
length of database: 14,793,348
effective HSP length: 82
effective length of query: 246
effective length of database: 11,714,740
effective search space: 2881826040
effective search space used: 2881826040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)