GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002366-TA|BGIBMGA002366-PA|undefined
         (328 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68493-11|CAA92798.2|  174|Caenorhabditis elegans Hypothetical p...    31   1.5  
Z54306-3|CAE17716.1|  165|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z99102-1|CAB11776.1|  523|Caenorhabditis elegans Hypothetical pr...    30   2.6  

>Z68493-11|CAA92798.2|  174|Caenorhabditis elegans Hypothetical
           protein C33A12.15 protein.
          Length = 174

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 199 TEKLFDDNNYLCDGFVP---WNIGNYANIRIESQNVGSEKFL 237
           T K+F    ++ DG +P   +NIG+    +IE++  G EKF+
Sbjct: 121 TIKIFIPQEFVSDGHIPKMIFNIGDVELTKIETEKYGLEKFV 162


>Z54306-3|CAE17716.1|  165|Caenorhabditis elegans Hypothetical
           protein B0457.6 protein.
          Length = 165

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 79  FVDSVVGRDISLSVVVSENVPNGVDSIVAVSNLPQSTTP 117
           F D VV R  SL  ++S + P+  D  + +  +P++TTP
Sbjct: 108 FSDPVVRRKSSLPTILSCHSPDHSDDFLGLPPIPEATTP 146


>Z99102-1|CAB11776.1|  523|Caenorhabditis elegans Hypothetical
           protein B0331.2 protein.
          Length = 523

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 285 GVDTVAGFQIFEPSRASFVTGWSVIRIPIANLIP 318
           G+D +   + F  S A  VTGW+++  P+ N +P
Sbjct: 260 GLDRLDAIEAFLISVAIGVTGWAILTFPLRNWLP 293


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.136    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,244,392
Number of Sequences: 27539
Number of extensions: 342264
Number of successful extensions: 640
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 637
Number of HSP's gapped (non-prelim): 3
length of query: 328
length of database: 12,573,161
effective HSP length: 82
effective length of query: 246
effective length of database: 10,314,963
effective search space: 2537480898
effective search space used: 2537480898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)