GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002366-TA|BGIBMGA002366-PA|undefined
         (328 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.4  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 3   RSECIQFTFESGIGLYGN--DSAMCSPFPIWNLGTYSSIEVETPHVKSTHFVEPNDR 57
           R E IQ T ++GI + GN  ++++ SP    N   Y  +     HV  ++  +P+ R
Sbjct: 330 RGERIQLTEKNGIDVLGNIMEASILSP----NQNVYGDLH-NFGHVAISYIHDPDHR 381


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 191 ITFNFEENTEKLFDDNNYLCDGFVPWNIGNYANIRI 226
           +  N E    +L   NNY  D  + ++ GN+  I+I
Sbjct: 170 LVVNPEIELPQLDISNNYTTDCTIEYSTGNFTCIQI 205


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,653
Number of Sequences: 429
Number of extensions: 4007
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 2
length of query: 328
length of database: 140,377
effective HSP length: 58
effective length of query: 270
effective length of database: 115,495
effective search space: 31183650
effective search space used: 31183650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)