GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002364-TA|BGIBMGA002364-PA|IPR009020|Proteinase
inhibitor, propeptide
         (88 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   0.48 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   1.9  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    19   7.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    19   7.8  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 0.48
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 25  YHNHFAVHVPSGPEHVDDIVRR 46
           YH    +  P G EH +D+V +
Sbjct: 286 YHALSGLKAPPGVEHFEDVVHK 307


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 1.9
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 25  YHNHFAVHVPSGPEHVDDIVRRHGYVNHGQRS 56
           Y + + V +PSG  H+ D+    GY ++  R+
Sbjct: 173 YDSKYLV-LPSGELHIRDVGPEDGYKSYQCRT 203


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory
          receptor candidate 27 protein.
          Length = 346

 Score = 19.0 bits (37), Expect = 7.8
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 67 DTPKYAIHCLFPAFSF 82
          + P Y ++ +F  FSF
Sbjct: 26 ENPTYRLYKIFVVFSF 41


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 19.0 bits (37), Expect = 7.8
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 25  YHNHFAVHVPSGPEHVDDIVRRHGYVNHGQ 54
           +H+H   H+ +    V+  V  +G + H Q
Sbjct: 322 HHHHAGHHIHAQHHVVNHHVAANGSLKHHQ 351


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.329    0.140    0.477 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,777
Number of Sequences: 317
Number of extensions: 757
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 88
length of database: 114,650
effective HSP length: 47
effective length of query: 41
effective length of database: 99,751
effective search space:  4089791
effective search space used:  4089791
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.4 bits)
S2: 37 (19.0 bits)