GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002364-TA|BGIBMGA002364-PA|IPR009020|Proteinase
inhibitor, propeptide
         (88 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    24   3.7  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    23   8.6  

>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 20  ARDTVYHNHFAVHVPSGPEHVDDIVRRHGYVNHGQRSGRVRLVTDKFDTP 69
           AR   + N   V   +GP + DD + R G      ++G   L+  + + P
Sbjct: 354 ARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLILLEQEKP 403


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 35  SGPEHVDDIVRRHGYVNHGQRSGRVRLVTDKFD 67
           S P + D     H   NH  +  + R V +++D
Sbjct: 603 SNPSNTDSRESNHKKYNHFHQKSQTRRVMEQYD 635


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.329    0.140    0.477 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 402,087
Number of Sequences: 5004
Number of extensions: 14193
Number of successful extensions: 31
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 2
length of query: 88
length of database: 2,362,478
effective HSP length: 61
effective length of query: 27
effective length of database: 2,057,234
effective search space: 55545318
effective search space used: 55545318
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 46 (22.6 bits)