GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002364-TA|BGIBMGA002364-PA|IPR009020|Proteinase
inhibitor, propeptide
         (88 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0272 + 19053455-19053587,19054665-19056627,19056827-190568...    26   4.3  
07_03_1720 + 29019578-29020172,29021208-29021383,29022993-29023058     25   7.5  
05_04_0275 - 19650555-19650625,19650927-19651221,19651593-196518...    25   9.9  

>06_03_0272 +
           19053455-19053587,19054665-19056627,19056827-19056887,
           19056975-19057198,19057573-19057642,19058453-19058515
          Length = 837

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/39 (25%), Positives = 22/39 (56%)

Query: 35  SGPEHVDDIVRRHGYVNHGQRSGRVRLVTDKFDTPKYAI 73
           +G   + ++++R   +N+G R+GR R+  + F     A+
Sbjct: 645 AGDSFLTNLIKRSFKMNNGTRNGRARIFVNGFPISDRAV 683


>07_03_1720 + 29019578-29020172,29021208-29021383,29022993-29023058
          Length = 278

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 15  HMCQGARDTVYHNHFAVHVPSGP 37
           + CQ A  TV+ N  A  VP GP
Sbjct: 194 YSCQPATMTVFINGVATEVPRGP 216


>05_04_0275 -
           19650555-19650625,19650927-19651221,19651593-19651895,
           19651978-19652182,19652266-19652501,19652619-19652816,
           19653785-19653907,19654227-19654514,19654618-19654794,
           19655580-19655915,19656753-19656863,19656977-19657227,
           19657431-19657566
          Length = 909

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 29  FAVHVPSGPEHVDDIVRRHGYVNHGQRSGRVRL-VTDKF 66
           + +H  S P   D ++ + G    G  SG V+  +TD F
Sbjct: 383 YGIHDGSNPLFDDHVIPKFGLQKGGVHSGHVQTGITDSF 421


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.329    0.140    0.477 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,298
Number of Sequences: 37544
Number of extensions: 97339
Number of successful extensions: 210
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 3
length of query: 88
length of database: 14,793,348
effective HSP length: 67
effective length of query: 21
effective length of database: 12,277,900
effective search space: 257835900
effective search space used: 257835900
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 51 (24.6 bits)