Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002363-TA|BGIBMGA002363-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR000571|Zinc finger, CCCH-type
(409 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 195 1e-50
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 52 2e-07
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 48 2e-06
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 47 6e-06
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 46 1e-05
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 43 7e-05
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 41 4e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 38 0.002
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 38 0.003
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 36 0.008
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 35 0.018
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 35 0.018
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 34 0.042
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.055
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 33 0.073
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 33 0.097
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 32 0.13
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 32 0.13
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 31 0.22
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 31 0.22
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.29
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 30 0.52
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.68
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 29 1.2
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 1.2
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 29 1.2
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 1.6
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 29 1.6
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 29 1.6
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 28 2.1
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 28 2.7
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 28 2.7
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 3.6
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 27 3.6
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 3.6
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 27 3.6
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 27 3.6
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 4.8
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 4.8
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 6.3
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 26 8.4
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 8.4
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 8.4
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 26 8.4
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 195 bits (475), Expect = 1e-50
Identities = 107/303 (35%), Positives = 170/303 (56%), Gaps = 25/303 (8%)
Query: 11 NRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPGARMRFKKTEI 70
N+Q WED +FP +C+ CLGDN Y+RMTKE G+ECKICS+P T+FRW + KT+I
Sbjct: 10 NKQEWEDVEFPSICERCLGDNSYVRMTKEPLGQECKICSKPCTIFRWIKERGQKPGKTQI 69
Query: 71 CQTCSKLKNVCQTCLLDLEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQNLESQLSNSDP 130
C C++ KN CQ+C+LDL++GLPI +RDAALK+ + P N++N+E++ QN + LSN +
Sbjct: 70 CVGCARYKNCCQSCMLDLQFGLPIALRDAALKLVESGPTNDINREFFAQNQQRLLSNGE- 128
Query: 131 TQPTNSLKSKGSSDLLVRLARTAPYY---KRNRPHVCSFWVKGECRRGEECPYRHEKPTD 187
T + S + +L+ ++ + + KR V S + E R + E+P
Sbjct: 129 TAYDSQEASAAARNLVKKVEKRELHSRPPKRKLDDVESKQILKEA-RASDASLNAERPLF 187
Query: 188 PDDPLADQNIKDRYYGVNDPVAEKXXXXXXXXXXXXXXEDKTVTTLYVGNLPDNVTEDEL 247
P + + N+ +N +DK + +L++ + D + + ++
Sbjct: 188 PVKKIINGNVS---LSIN----------------MEPPKDKKIASLFLIGVEDELADYKI 228
Query: 248 RGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAE-HAAEKTFNRLVIFGKRLTIKWGKSQG 306
R HF QYG ++ + RA+CAFV + +R++AE AA +VI G RL ++WGK +
Sbjct: 229 RKHFEQYGPLKSVVCSHRAKCAFVNFKTRSSAEIAAAASPDGNVVIEGFRLKVQWGKPRS 288
Query: 307 RQG 309
G
Sbjct: 289 LGG 291
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 51.6 bits (118), Expect = 2e-07
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 227 DKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKT 286
D +T++VG L V+E+EL+ F +GEI + + P C FVQ+ +R +AE A +
Sbjct: 299 DTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQ- 357
Query: 287 FNRLVIFGKRLTIKWGKSQ 305
+ R+ + WG++Q
Sbjct: 358 LQGYPLGNSRIRLSWGRNQ 376
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 48.4 bits (110), Expect = 2e-06
Identities = 39/183 (21%), Positives = 75/183 (40%), Gaps = 16/183 (8%)
Query: 137 LKSKGSSDLLVRLARTAPYYKRNR---PHVCSFWVKGECRRGEECPYRHEKPTDPDDPLA 193
LKS+ S+ ++R + Y K ++ C ++ +G C G +C Y H P D D
Sbjct: 87 LKSQVKSETRCVISRDSGYTKADKNPGSFFCLYFARGMCSEGSKCEYLHRLPKDTD---- 142
Query: 194 DQNIKDRYYGVN-DPVAEKXXXXXXXXXXXXXXEDKTVTTLYVGNL-PDNVTEDELRGHF 251
++ N D + + TLYVG + P + E+ + HF
Sbjct: 143 -------FFNANVDCFGREKHADYRDDMGGVGSFLRQNYTLYVGGITPTDDIEEIVSRHF 195
Query: 252 YQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRLVIFGKRLTIKWGKSQGRQGLT 311
++G+I + ++ AF+ Y + A+ A E ++ + + L ++W +
Sbjct: 196 AEWGDIERIRVLNSRGIAFITYLNEANAQFAKEAMAHQSLDHDECLNVRWATTDPNPASQ 255
Query: 312 EKN 314
+N
Sbjct: 256 ARN 258
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 46.8 bits (106), Expect = 6e-06
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 230 VTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTS-RNAAEHAAEKTFN 288
V T+YVGNLP N DE+ + G I ++P CAF+ + +A +
Sbjct: 114 VKTVYVGNLPPNTPIDEILS-CVRTGPIESAWILPEKNCAFISFLDPSHATAFFQDAALK 172
Query: 289 RLVIFGKRLTIKWGKS 304
RL I G + + WGK+
Sbjct: 173 RLTIRGTEVKVGWGKN 188
Score = 43.2 bits (97), Expect = 7e-05
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEK 285
+Y+GN D++T + L+ F ++GEI + CAFV +TS +A +A ++
Sbjct: 416 IYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINAIDR 468
Score = 39.5 bits (88), Expect = 8e-04
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEK 285
+++GNLP+ +TEDE+R +G I + +V AFV + + AA A ++
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQE 260
Score = 30.7 bits (66), Expect = 0.39
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 232 TLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKT-FNRL 290
T+Y+GN+ + T +E+ + + G + + + FV + +A E + + L
Sbjct: 324 TVYIGNIHADTTIEEIC-NAVRGGLLHNIRYLQEKHICFVTFVDPVSAFRFFEMSNIHGL 382
Query: 291 VIFGKRLTIKWGKSQG 306
VI +RL I WGK G
Sbjct: 383 VIRNRRLKIGWGKHSG 398
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 46.0 bits (104), Expect = 1e-05
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 227 DKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKT 286
D TT++VG L N++E +L+ F +G I + + C FVQY+ ++AAE A T
Sbjct: 293 DPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAI-NT 351
Query: 287 FNRLVIFGKRLTIKWG 302
++ + + WG
Sbjct: 352 MQGALVGTSHIRLAWG 367
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 43.2 bits (97), Expect = 7e-05
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 227 DKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKT 286
D T +YV LP+N+T ELR +F +GEI L + + R AE A +
Sbjct: 172 DPNNTAVYVHQLPENITTQELRSYFLHFGEI--LYTQVNNNSGRIVFAQRYFAEQAINE- 228
Query: 287 FNRLVIFGKRLTIKWGK 303
N + G R+ + W +
Sbjct: 229 MNNFPLHGVRIQLSWAR 245
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 40.7 bits (91), Expect = 4e-04
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRLVI 292
L+VGNLP V+ + F YG + + ++ AF+ + S A+H E+ + +
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNGKRIF 648
Query: 293 FG 294
FG
Sbjct: 649 FG 650
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 38.3 bits (85), Expect = 0.002
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLV------PRAQCAFVQYTSRNAAEHAAE 284
T +Y+ NL +TE E F Q+GEI L+LV PR FV Y + A+ A +
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRG-FGFVNYANHECAQKAVD 319
Query: 285 KTFNRLVIFGKRLTIKWGKSQGRQGLTEK 313
+ N GK+L + G++Q + E+
Sbjct: 320 E-LNDKEYKGKKLYV--GRAQKKHEREEE 345
Score = 27.5 bits (58), Expect = 3.6
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 229 TVTTLYVGNLPDNVTEDELRGHFYQYGEIR----CLTLVPRAQC--AFVQYTSRNAAEHA 282
T +LYVG L +VTE L F G + C V R A+V + + E A
Sbjct: 78 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 137
Query: 283 AEKTFNRLVIFGKRLTIKWGK 303
++ N +I G+ I W +
Sbjct: 138 LDE-LNYTLIKGRPCRIMWSQ 157
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 37.5 bits (83), Expect = 0.003
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLV-------PRAQCAFVQYTSRNA 278
E + ++VG +P + TE+E R F Q+G + TL+ PR FV Y + +A
Sbjct: 242 EQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRG-FGFVTYENESA 300
Query: 279 AEHAAEKTFNRLVIFGKRLTIK 300
E + + + I GK + +K
Sbjct: 301 VEATMSQPY--ITIHGKPVEVK 320
Score = 29.1 bits (62), Expect = 1.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLV 263
+++G L T+D LR +F Q+GE+ T++
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVM 195
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 36.3 bits (80), Expect = 0.008
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQC------AFVQYTSRNAAEHAAEKT 286
LYVG LP E ++R +F Q+G + L + + AF+++ S + A AE T
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAE-T 165
Query: 287 FNRLVIFGKRLTIK 300
+ +++GK L K
Sbjct: 166 MHNYLLYGKLLQCK 179
>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 170
Score = 35.1 bits (77), Expect = 0.018
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 163 VCSFWVKGECRRGEECPYRHE 183
VC W++G C++GE+C + HE
Sbjct: 53 VCKHWLRGLCKKGEQCDFLHE 73
Score = 29.9 bits (64), Expect = 0.68
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 160 RPHVCSFWVKGECRRGEECPYRHEKPTDPDDP 191
+P C ++ G C G CP H K ++P P
Sbjct: 132 KPRPCPKYLAGFCPLGPNCPDAHPKHSEPPHP 163
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 156 YKRNRPHVCSFWV-KGECRRGEECPYRHEKPT 186
Y + C F+ +G C GEEC Y H P+
Sbjct: 74 YNLKKMPPCHFYAERGWCSNGEECLYLHLDPS 105
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 35.1 bits (77), Expect = 0.018
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 88 LEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSLKSKGSSDL 145
LEYG+ V D ++K DL N +KE + + L+N D TQ NS + G S++
Sbjct: 592 LEYGI---VEDQSMKSNPDL--NSFSKELFSRGTNELLNNGDDTQSGNSTPAMGVSEI 644
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 33.9 bits (74), Expect = 0.042
Identities = 12/35 (34%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCL 260
ED++ +T+YVGN+ ++++E+ HF +YG++ +
Sbjct: 13 EDES-STIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 33.5 bits (73), Expect = 0.055
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRLV 291
LYV NLP + + F YG ++ + ++ A V Y S ++A A + NR V
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNSAIVSYESLSSAIVARDALHNRPV 60
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 33.1 bits (72), Expect = 0.073
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 158 RNRPHV-CSFWVKGECRRGEECPYRHEKPTD 187
+N HV C F+ G C GE CP+ H T+
Sbjct: 40 KNLQHVPCKFFRNGTCTAGENCPFSHSLETE 70
Score = 29.5 bits (63), Expect = 0.90
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 160 RPHVCSFWVKGECRRGEECPYRHEKPTDPDDP 191
RP +C +++KG C+ G +C H P + + P
Sbjct: 71 RP-ICKYFLKGNCKFGPKCALSHALPGNTNLP 101
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 32.7 bits (71), Expect = 0.097
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 232 TLYVGNLPDNVTEDELRGHFYQ----YGEIRCLTLVP----RAQCAFVQYTSRNAAEHAA 283
TLYV NL D + +++LR Y YG + + + R Q V + AA A
Sbjct: 5 TLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAA--IA 62
Query: 284 EKTFNRLVIFGKRLTIKWGKSQGR--QGLTEKND 315
K + FGK + I++ S+ + + + +ND
Sbjct: 63 MKALKNFIFFGKEMKIQYAHSKSKIIERIVAEND 96
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 32.3 bits (70), Expect = 0.13
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 164 CSFWVK-GECRRGEECPYRHEKP 185
CSF+ K G CR GE C +H KP
Sbjct: 18 CSFYYKIGACRHGERCSRKHVKP 40
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.3 bits (70), Expect = 0.13
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQY 273
+++GNLP + E E+ F ++G+I + ++ + AFV +
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHF 341
Score = 32.3 bits (70), Expect = 0.13
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHA 282
+Y ++ D++T +EL QYGEI + + FV YT+ + A A
Sbjct: 502 VYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKA 551
Score = 31.9 bits (69), Expect = 0.17
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAA----EH 281
+D T+++GNL E+ ++G ++ +P FV + + +AA ++
Sbjct: 404 KDNGNRTVFLGNLHTKTKGHEICD-LIRHGGLQDFHYIPEKHICFVTFITYSAANAFHDY 462
Query: 282 AAEKTFNRLVIFGKRLTIKWGKSQG 306
AE+ +++ G+R+ + WGK G
Sbjct: 463 LAEE---EVLLHGRRIKVGWGKESG 484
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 31.5 bits (68), Expect = 0.22
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 232 TLYVGNLPDNVTEDELRGHFYQYGEIRCLTLV 263
++YVGN+ +VT +EL+ HF G + +T++
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVTIL 87
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 31.5 bits (68), Expect = 0.22
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLV 263
L+VGNL T+ +L+ HF Q G+IR + L+
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLM 260
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 31.1 bits (67), Expect = 0.29
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 227 DKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQC-----AFVQYTSRNAAEH 281
++ T++VGNL +VTE L F +GEI + L + + AFV++ A+
Sbjct: 2 ERRKATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKE 61
Query: 282 AAE 284
A E
Sbjct: 62 AME 64
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 30.3 bits (65), Expect = 0.52
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 175 GEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKXXXXXXXXXXXXXXED----KTV 230
G + YR + P + D +K+ Y P + + E+ +
Sbjct: 34 GRKIIYRFNGVSKPPLVVRDPRLKNPIYARGIPKSGRPFLKSLQTINYDYNENSLGPEPP 93
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTL 262
T ++V N+ VT ++LR HF +GE+ L L
Sbjct: 94 TQVFVSNISPLVTSEQLRYHFKSFGEVFDLDL 125
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.9 bits (64), Expect = 0.68
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 232 TLYVGNLPDNVTEDELRGHFYQYGEIRCLTL 262
T++VGNL N TED+L F G+I+ + L
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRL 397
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 232 TLYVGNLPDNVTEDELRGHF-YQYGEIR-CLTLVPRAQCAFVQY 273
T+YVGNLP + +E+EL+ F Q G R C FV++
Sbjct: 427 TIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEF 470
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 29.1 bits (62), Expect = 1.2
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 188 PDDPLADQNIKDRYYGVNDPVAEKXXXXXXXXXXXXXXEDKTVTTLYVGNLPDNVTEDEL 247
P+ LA N KD++ N P D+ V L+VGNLP + + + L
Sbjct: 55 PEKQLAQSNDKDKHSVSNPP-----HKTLKSKRQKGKNNDRKVI-LFVGNLPKDSSVETL 108
Query: 248 RGHFYQYGEI 257
+ HF + G++
Sbjct: 109 QLHFKRAGQV 118
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 29.1 bits (62), Expect = 1.2
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 163 VCSFWVKGECRRGEECPYRHEKPTDPDDPLADQNI 197
VC ++++ CR G C +H P++ + + N+
Sbjct: 3 VCKYFLQNRCRYGTNCKNQHTVPSNGQNAFSKVNV 37
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 232 TLYVGNLPDNVTEDELRGHFYQYGEIRCLTLV 263
T++V NL TE EL HF Q+G + LV
Sbjct: 278 TVFVRNLLFECTEQELYNHFRQFGPLAYAKLV 309
Score = 27.5 bits (58), Expect = 3.6
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQC------AFVQYTSRNAAEHAAE 284
+TL+V NL +D+L F G I+ +V + FV ++ A+ AA+
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 285 KTFNRLVIFGKRLTIKWGKSQGRQGL-TEKNDGV 317
+ N+ + G+ L + + + R + T++N V
Sbjct: 65 ELKNK-KLHGRILRLDFATPRKRSEVDTDQNKAV 97
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 28.7 bits (61), Expect = 1.6
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQ------CAFVQYTSRNAA 279
ED T + V N+P ++ +D L HF Q G R AF + A
Sbjct: 197 EDTIPTAIVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEA 256
Query: 280 EHAAEKTFNRLVIFGKRLTIKW 301
+ +T N I G+RL ++W
Sbjct: 257 Q-VVVQTLNGYEINGRRLRVEW 277
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 28.7 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 97 RDAALKVQDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSLKSKGSSDLLVRLA 150
R+A K Q+DL +N NL+S+ ++ + L K +SD +R A
Sbjct: 153 RNALKKEQEDLIQNSATSHSKSDNLDSESADDSDLADESELSKKYTSDRKIRNA 206
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 28.3 bits (60), Expect = 2.1
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEK 285
T+++V N+P ++ L+ +G ++ + R A+V + + + A K
Sbjct: 315 TSVFVKNIPPETSDVSLKSAMSIFGPVKAIEFARRKGTAYVDFVNHECVQLALNK 369
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 27.9 bits (59), Expect = 2.7
Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 58 CPGARMRFKKTEICQTCSKLKNVCQTCLLDLEYG-LPIQVRDAALKVQDDLPRNEVNKEY 116
C G+ K++I + C+ L C D +P++ + ++++ + N+E
Sbjct: 34 CSGSSWTSFKSKILKICAPL--CCMGSDNDESMAEMPLEPQVEPKSIENNYTLKKKNEEG 91
Query: 117 YIQNLESQLSNSDPTQPTNSLKSKGSSDLLVRLA 150
++ E++ SN +P++ N G S + +A
Sbjct: 92 FLSQQENKSSNQNPSKANNLFDKLGVSKPITFIA 125
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 27.9 bits (59), Expect = 2.7
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLV 263
++VGN+P +V+E ++ F Q G ++ LV
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLV 39
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 1 MATSKSTNTYNRQNWEDADFPILCQT 26
+ T S+N + ++W+D DF +L QT
Sbjct: 658 LITGGSSNNRSAKHWDDHDFDLLTQT 683
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 27.5 bits (58), Expect = 3.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 163 VCSFWVKGECRRGEECPYRHEKP 185
+C ++ KG C+ G +C H P
Sbjct: 69 ICKYFQKGNCKFGSKCALEHVLP 91
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 3.6
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQ-----CAFVQYTSRNAAEHAAEKTF 287
L V N+ N+T+++++ F +G+I + L Q ++QY + +A +A EK
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEK-M 400
Query: 288 NRLVIFGKRLTIKWGKSQ 305
N + G+ + + G +
Sbjct: 401 NGFDLAGRNMRVCLGNDK 418
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEI 257
T L+VG +P T +++ F YG+I
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQI 30
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 8 NTYNRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPF 52
NT+ W A F I C C + + + + CK C+ PF
Sbjct: 54 NTHPFLPWRKAKFHIPCVICGACKNSLTVEEYRSTVHCKYCNHPF 98
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 228 KTVTTLYVGNLPDNVTEDELRGHFYQYGEIR 258
K +YVGNL TE+++ F + GEIR
Sbjct: 29 KQSNCVYVGNLSFYTTEEQIYALFSKCGEIR 59
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLV 263
+YVGN+P + E+++ F Q G ++ LV
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLV 37
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 26.6 bits (56), Expect = 6.3
Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 5/117 (4%)
Query: 98 DAALKVQDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSLKSKGSSDLLVRLARTAPYYK 157
+ +LK Q R+ E + S S+S + SLK +S L + + P+ +
Sbjct: 163 EGSLKSQQSNTRSNSVHEKQNTDHASNASSSSSVVSSPSLKPNNTSPLKLFQGASDPFTR 222
Query: 158 RNRPHVCSFWVKGECRRGEEC-----PYRHEKPTDPDDPLADQNIKDRYYGVNDPVA 209
+ + GE+ P R +KP + A N KD Y V + +A
Sbjct: 223 EHLNQLTQDVKSNSFENGEKQFSLPEPRRPQKPMRTTERKASLNTKDLYQEVEEVMA 279
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 8.4
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 88 LEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSLKSKGSSDLLV 147
+ Y + + D++ +++ + RN N YI+NL +L DP+ +LK K ++ L
Sbjct: 648 ISYAMTEEQIDSSTELRQSMTRNVQNYLDYIKNLYHRLGPYDPS--LLALKQKTATMLAA 705
Query: 148 RL 149
L
Sbjct: 706 ML 707
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEK 285
L V N P + +EL F +GE+ + + P A +++ + A K
Sbjct: 508 LLVKNFPYGTSAEELTSLFSPFGELGRILIPPAGTIAIIEFLNAPDCRQAFSK 560
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 26.2 bits (55), Expect = 8.4
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 156 YKRNRPHVCSFWVKGECRRGEECPYRHE 183
++ R +C ++ G C + E+C HE
Sbjct: 228 HEPTRKTICPKFLNGRCNKAEDCNLSHE 255
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 8.4
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 67 KTEICQTCSKLKNVCQTCLLDLEYGLPIQVRDAA-LKVQDDLPRNEVNKEYYIQNLESQL 125
KT C T SK++N+ T + L P + + L +DL + E+ ++Q
Sbjct: 103 KTFCCITYSKIENLSNTRMARLT--APSKGPSFSNLNKPNDLLKAEIEDNEASHYSQNQS 160
Query: 126 SNSDPTQPTNSLKSKGSSD 144
S+SD + + K SSD
Sbjct: 161 SDSDSDEAPEEVSLKSSSD 179
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.135 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,659,787
Number of Sequences: 5004
Number of extensions: 63273
Number of successful extensions: 218
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 155
Number of HSP's gapped (non-prelim): 69
length of query: 409
length of database: 2,362,478
effective HSP length: 74
effective length of query: 335
effective length of database: 1,992,182
effective search space: 667380970
effective search space used: 667380970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
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