Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002363-TA|BGIBMGA002363-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR000571|Zinc finger, CCCH-type
(409 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 444 e-125
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 55 1e-07
SB_11425| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 2e-07
SB_14329| Best HMM Match : RRM_1 (HMM E-Value=3.5e-05) 50 5e-06
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 42 0.001
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 0.001
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 39 0.008
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 38 0.015
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.020
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.026
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.045
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.060
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 36 0.079
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.14
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.14
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 33 0.32
SB_31227| Best HMM Match : RIO1 (HMM E-Value=0.13) 33 0.42
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.42
SB_56142| Best HMM Match : zf-B_box (HMM E-Value=2.9e-10) 33 0.55
SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.55
SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10) 33 0.55
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.55
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.97
SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.97
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 32 0.97
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 32 0.97
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 32 0.97
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 32 0.97
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 31 1.3
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 31 1.3
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_50345| Best HMM Match : Cadherin (HMM E-Value=0) 31 1.7
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 31 2.2
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.2
SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.0
SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.0
SB_5270| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.0
SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.9
SB_23461| Best HMM Match : DUF504 (HMM E-Value=0.0038) 30 3.9
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 30 3.9
SB_47948| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.9
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.9
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.9
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 30 3.9
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 29 5.2
SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 29 5.2
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31) 29 5.2
SB_47099| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 29 6.8
SB_2244| Best HMM Match : zf-CCCH (HMM E-Value=0.004) 29 6.8
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 29 9.0
SB_13697| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.0
SB_30827| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.0
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 444 bits (1095), Expect = e-125
Identities = 200/318 (62%), Positives = 247/318 (77%), Gaps = 20/318 (6%)
Query: 1 MATSKSTNTYNRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPG 60
MATSKS NTYNRQNWEDA T+E +G+ECKIC+RPFT+FRWCPG
Sbjct: 90 MATSKSANTYNRQNWEDA------------------TRETHGRECKICARPFTIFRWCPG 131
Query: 61 ARMRFKKTEICQTCSKLKNVCQTCLLDLEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQN 120
ARMRFKKTEICQTCSKLKN+CQTCLLDLEYGLP+QVRD +L ++D++P+++VNKEYY QN
Sbjct: 132 ARMRFKKTEICQTCSKLKNICQTCLLDLEYGLPVQVRDKSLGLKDEMPKSDVNKEYYTQN 191
Query: 121 LESQLSNSDPTQPTNSLKSKGS--SDLLVRLARTAPYYKRNRPHVCSFWVKGECRRGEEC 178
+E +L++SD T P +L+ K + SDLL++LART PYYKRNRPH+CSFWVKGEC+RGEEC
Sbjct: 192 VERELADSDGTSPGGALQGKANAPSDLLMKLARTTPYYKRNRPHICSFWVKGECKRGEEC 251
Query: 179 PYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKXXXXXXXXXXXXXXEDKTVTTLYVGNL 238
PYRH+ PTDP+DPLADQNIKDRYYGVNDPVA K D+++TTLYVG L
Sbjct: 252 PYRHDMPTDPNDPLADQNIKDRYYGVNDPVANKLLKQAQSMPMLDTPTDRSITTLYVGGL 311
Query: 239 PDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRLVIFGKRLT 298
VTE +LR HFYQ+GE+R +++VPR CAFV +TSR AAE AA+++FN+L++ G+RL
Sbjct: 312 EGKVTEQDLRDHFYQFGELRSISMVPRQNCAFVCFTSRAAAEAAADRSFNKLILKGRRLK 371
Query: 299 IKWGKSQGRQGLTEKNDG 316
I WGKSQG+Q + G
Sbjct: 372 IMWGKSQGQQPAPGRQGG 389
Score = 29.9 bits (64), Expect = 3.9
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 387 RLHYPSQDPARLGA 400
++HYPSQDP RLGA
Sbjct: 518 QVHYPSQDPQRLGA 531
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 54.8 bits (126), Expect = 1e-07
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRL 290
+T++VG+L VT+D L+G F ++G I + L+P CA++Q R A A +K N +
Sbjct: 541 STIWVGHLAKIVTQDTLQGIFEEHGTITSIDLIPPRGCAYIQMEKREDAYRALDKLRN-I 599
Query: 291 VIFGKRLTIKWGKSQG 306
++G + + W ++G
Sbjct: 600 KLYGNSVKLAWAPAKG 615
>SB_11425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 54.0 bits (124), Expect = 2e-07
Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 159 NRPHVCSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKXXXXXXX 218
N+ + C ++ KG C G EC + H PT+ D R+ D
Sbjct: 183 NKHYYCIYFAKGCCHLGAECGFIHSIPTEKD--------VGRFGLAQDCFGRDRHQNHKE 234
Query: 219 XXXXXXXEDKTVTTLYVGNLPDNVTEDE-LRGHFYQYGEIRCLTLVPRAQCAFVQYTSRN 277
DK TLYVG L + +E L F ++GEI + ++P+ AFV+Y SR
Sbjct: 235 NLGGVGAFDKESCTLYVGGLTLHTKLEEWLWEEFGEWGEIEDIRIIPKKNIAFVRYKSRL 294
Query: 278 AAEHA 282
AE A
Sbjct: 295 NAEFA 299
>SB_14329| Best HMM Match : RRM_1 (HMM E-Value=3.5e-05)
Length = 365
Score = 49.6 bits (113), Expect = 5e-06
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 6/145 (4%)
Query: 158 RNRPHVCSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKXXXXXX 217
R+ +C + +G C G EC + HE P D + + ++D ++
Sbjct: 63 RDDAGICLNFARGCCPLGFECSWIHEIP-DAKFNVKQETMRDCFFRER----HSEVRDDQ 117
Query: 218 XXXXXXXXEDKTVTTLYVGNLP-DNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSR 276
+D+T T+YVG + + + HF ++GEI + L+ AFV+Y R
Sbjct: 118 SGVGSFNTDDETSRTVYVGGIACSKDMKSIVYKHFSEWGEIENMRLLEHKGVAFVRYKLR 177
Query: 277 NAAEHAAEKTFNRLVIFGKRLTIKW 301
+AE A E + + + L I+W
Sbjct: 178 GSAEFAMEAMQRQSLDDNEVLNIRW 202
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 41.5 bits (93), Expect = 0.001
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPR-----AQCAFVQYTSRNAAEHAAEKTF 287
L+VGNLP+N+ E+++ HF +YG + + ++P+ + +FV + +A A E
Sbjct: 8 LWVGNLPENIREEDIVKHFTRYGRVESVKILPKRSAEGGRASFVDFVDIRSATKAHESP- 66
Query: 288 NRL 290
NR+
Sbjct: 67 NRI 69
Score = 36.3 bits (80), Expect = 0.045
Identities = 18/79 (22%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 230 VTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNR 289
+ T++VG + ++++E ++ HF +YG + + + A V + S ++A A + R
Sbjct: 327 INTIWVGGVTNSLSEQQVERHFGRYGRVTKVVINRVTNQALVSFDSVDSATIAHAQMKGR 386
Query: 290 LVIFGKRLTIKWGKSQGRQ 308
+F +R+ +++ + RQ
Sbjct: 387 -TMFSRRVRVEFVSRESRQ 404
Score = 33.5 bits (73), Expect = 0.32
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 232 TLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRA---QCAFVQYTSRNAAEHAAEKTFN 288
TL+VGN+ T +L+ F +YGE+ + + + AFVQ+ ++A A K +
Sbjct: 250 TLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPGNNPYAFVQFAELSSAIQARRK-MD 308
Query: 289 RLVIFGKRLTIKWGK 303
R + R+ + +GK
Sbjct: 309 REYVGRNRVKVGFGK 323
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 41.5 bits (93), Expect = 0.001
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQ------CAFVQYTSRNAAEHAAE 284
+T+YVGNLP ++T +L F +YG++ +T++ + AF+ + R +A++A
Sbjct: 10 STVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAV- 68
Query: 285 KTFNRLVIFGKRLTIKWGKSQGR 307
N+ +FG+ + K GR
Sbjct: 69 AAVNKKQMFGRTIKCTIAKDNGR 91
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 38.7 bits (86), Expect = 0.008
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRLVI 292
+Y+G LP TED++R F YG +R + L + FV++ A+ A + N +
Sbjct: 5 VYLGRLPYGTTEDDVRRFFRSYGRLRDINL--KNNYGFVEFEDDRDADDAVYEC-NGKEM 61
Query: 293 FGKRLTIKWGKSQGRQGLTEKNDG 316
G+R+ ++ + R + + G
Sbjct: 62 LGERILVEHSRGGARSSSSRPSRG 85
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 37.9 bits (84), Expect = 0.015
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQC----AFVQYTSRNAAEHAAE 284
+YVGNLP +V E +L FY+YG I + L R AFV++ AE A +
Sbjct: 263 VYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDAEDAVK 318
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 37.5 bits (83), Expect = 0.020
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRL 290
T L+VG L +L FY YG++ L + F++Y AE A + NR
Sbjct: 6 TQLFVGRLSKETKLRDLENVFYLYGKLLRCDL--KTAYGFIEYEDPRDAEEAMRRENNR- 62
Query: 291 VIFGKRLTIKWGKSQGRQG 309
+FG R+ +++ +S G +G
Sbjct: 63 KLFGSRIVVEYVRS-GERG 80
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 37.1 bits (82), Expect = 0.026
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 228 KTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKT 286
K V +Y+ NL ++TE++L+ + QYG + + + AFV +T R+ A A E+T
Sbjct: 326 KKVKVVYLRNLSPSITEEKLKEEYSQYGAVDRVKKL--KDYAFVHFTERDHALKAIEET 382
Score = 32.3 bits (70), Expect = 0.73
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 227 DKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLV--PRAQC----AFVQYTSRNAAE 280
+K + +++G +P + EDEL F + G I L+ P + AF +++++ A+
Sbjct: 148 EKVCSQVFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQ 207
Query: 281 HAAEKTFNRLVIFGKRLTI 299
+A +K N+ + GKRL +
Sbjct: 208 NAVKKLDNKEIRPGKRLGV 226
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 36.3 bits (80), Expect = 0.045
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 230 VTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQ-CAFVQYTSRNAAEHAAEKTFN 288
+T +Y+G+L DN ++ E+ F YG ++ + + AF + R AE A +
Sbjct: 31 MTKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPGFAFCIFDDRRDAEDAVRELDG 90
Query: 289 RLVIFGKRLTIKWGKSQGR 307
R I G+R+ ++ K R
Sbjct: 91 R-YICGQRVRVELAKGPSR 108
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 35.9 bits (79), Expect = 0.060
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEI 257
TT+YVGNLP +V + EL+ F QYG I
Sbjct: 615 TTVYVGNLPPDVKDYELQQMFSQYGSI 641
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 35.5 bits (78), Expect = 0.079
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHA 282
+Y+G LP ED+++ FY YG + ++ + FV++ + AE A
Sbjct: 5 VYLGRLPYGTREDDVKKFFYTYGRFKIREIILKDGYGFVEFDYSDDAEDA 54
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 34.7 bits (76), Expect = 0.14
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 230 VTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQ-CAFVQYTSRNAAEHAAEKTFN 288
++ +Y+GN+ DN ++ E+ F +G +R + + AF + R AE A +
Sbjct: 1 MSRVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAEDAVRELDG 60
Query: 289 RLVIFGKRLTIKWGKSQGR 307
R I G+R ++ K R
Sbjct: 61 R-YICGQRARVELAKGPSR 78
>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2142
Score = 34.7 bits (76), Expect = 0.14
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 154 PYYKRNRPHV----CSFWVKGECRRGEECPYRH-EKPTDPDDPLADQNIKDRYYGVNDPV 208
P+Y + H C F+ KG C +G+ C Y H ++ + P P + + Y V +P+
Sbjct: 1337 PFYDQRYIHQPTIPCRFFAKGNCLKGDRCLYLHAQEASHPMPPTFTETVTCSSYEVTNPL 1396
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 33.5 bits (73), Expect = 0.32
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEIR 258
+D T L+VG +P +D LR F Q+GEIR
Sbjct: 5 QDTKFTKLFVGGIPYESGDDALRKFFAQFGEIR 37
>SB_31227| Best HMM Match : RIO1 (HMM E-Value=0.13)
Length = 633
Score = 33.1 bits (72), Expect = 0.42
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQY 273
++V + D E +L QYG I C+T++P+ + A V++
Sbjct: 50 VHVRGVADEAREQDLMQCLSQYGNISCITMMPKIRQALVEF 90
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 33.1 bits (72), Expect = 0.42
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQC------AFVQYTSRNAAEHAAE 284
T LYVG+L N+TE ++ F +G + + L+ ++ FVQ+ AA+ A E
Sbjct: 242 TRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAME 301
Query: 285 KTFNRLVIFGKRLTI 299
+ N + G+ L I
Sbjct: 302 Q-MNGFELAGRPLKI 315
>SB_56142| Best HMM Match : zf-B_box (HMM E-Value=2.9e-10)
Length = 691
Score = 32.7 bits (71), Expect = 0.55
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 17/94 (18%)
Query: 20 FPILCQTCLGDNPYIRMTKEKYGKECKICSRPFT----VFRWC---PGARMRFKKTEICQ 72
+ ++C+ C+ + IR+TK ++ + + T V ++C G R++ C
Sbjct: 116 YQLMCEACIASHRRIRVTKHQHIESMEEIRNKGTLRSSVPQFCHIHEGERIKL----FCD 171
Query: 73 TCSKLKNVCQTCLLD----LEYGLPIQVRDAALK 102
TC +L +CQ C +D +YGLP V D K
Sbjct: 172 TCDEL--ICQECTIDNHREHKYGLPKTVIDREKK 203
>SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 32.7 bits (71), Expect = 0.55
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 162 HVCSFWVKGECRRGEECPYRHE 183
HVC +++KG+C G++C H+
Sbjct: 98 HVCPYYIKGKCAHGQKCRLSHK 119
>SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10)
Length = 508
Score = 32.7 bits (71), Expect = 0.55
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 154 PYYKRNRPHVCSFWVK-GECRRGEECPYRHEKPTDPDDPLADQN 196
P R VC F+ K G CR GE+C + H++ +D ++++
Sbjct: 33 PIENARRQKVCRFYAKKGNCRFGEKCRFVHKEIISKEDDKSERS 76
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 32.7 bits (71), Expect = 0.55
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLV 263
+ + +YVG LP + TE +R HF ++G I + +
Sbjct: 152 KSRNFRVIYVGGLPSHFTEQTVREHFKKFGVIEAVKFI 189
Score = 28.7 bits (61), Expect = 9.0
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 227 DKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLV 263
+K +++VG L E+ L+ +F Q+GE+ + ++
Sbjct: 76 EKNSRSVFVGGLASGTDEEGLKDYFEQFGEVESVRIM 112
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 31.9 bits (69), Expect = 0.97
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTL-VPRAQCAFVQYTS 275
L+VG LP++ TE L +F Q+GE+ + + P FV + S
Sbjct: 201 LFVGRLPESTTEKTLMEYFAQFGEVTDVYIPKPFRHFGFVTFAS 244
>SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 31.9 bits (69), Expect = 0.97
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 147 VRLARTAPYYKRNRPHVCSFWVKGECRRGEECPYRH 182
V+L+ AP K + VC + KG+CR GE+C + H
Sbjct: 95 VQLSEQAPTLK-GKKRVCWKFQKGKCRFGEKCKFVH 129
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 31.9 bits (69), Expect = 0.97
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLV-----PRAQCAFVQYTSRNAAEHAAEKTF 287
+++G L ++VTE+ L F ++G ++ + ++ Q FV + S + AE AA
Sbjct: 526 VWIGGLSEDVTENVLLELFNKFGPVKDVVILRDESGKSRQSGFVHFWSSDVAE-AANVGM 584
Query: 288 NRLVIFGKRLTIKWGK 303
N I GK + K+ K
Sbjct: 585 NGCDILGKIVETKYAK 600
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 31.9 bits (69), Expect = 0.97
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQC------AFVQYTSRNAAEHAAEKT 286
+Y+G++P E+E++ F Q+G + + L + AFV++ A+ AA+ T
Sbjct: 100 IYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKIAAD-T 158
Query: 287 FNRLVIFGKRL 297
+ ++FG+ L
Sbjct: 159 MHNYMMFGRLL 169
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 31.9 bits (69), Expect = 0.97
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLV--PRAQCAFVQYTSRNAAEHAA 283
+++ T LY+ NLP N E L F +YG++ ++ V + +AE
Sbjct: 174 QEQDPTNLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGVGFARMESAEKCE 233
Query: 284 E--KTFNRLVIFG--KRLTIKW--GKSQGRQGLTEK 313
+ K FN+ ++ G + L +K+ G + RQG ++
Sbjct: 234 QVIKDFNKKMLPGCIQELVVKFADGGPKKRQGQAKR 269
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 31.9 bits (69), Expect = 0.97
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 229 TVTTLYVGNLPDNVTEDELRGHFYQYGEIRC 259
T +++G L N +E++++ +F Q+G++ C
Sbjct: 181 TTKKIFIGGLSTNTSEEDMKKYFSQFGKVSC 211
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 31.5 bits (68), Expect = 1.3
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQ-CAFVQYTSRNAAEHAAEK 285
T LYVGNL N EL F ++G + + + AFV+Y AE A +
Sbjct: 4 TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRE 59
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 31.5 bits (68), Expect = 1.3
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 238 LPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRLVIFGKRL 297
LP +V E ++ YG+IR ++L + FV++ AE A R +I G+R+
Sbjct: 696 LPRDVRESDVEKFLRGYGKIRDISL--KRGYGFVEFDDHRDAEDAVHDLNGRDLI-GERV 752
Query: 298 TIKWGKSQGRQG 309
+++ K + +G
Sbjct: 753 VVEFSKGRRSEG 764
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 31.5 bits (68), Expect = 1.3
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAF------VQYTSRNAAEHAAEKT 286
L+V N+ + ED++ F YGEI+ L + + F V+Y + A+ A E
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALE-A 353
Query: 287 FNRLVIFGKRLTIKWGKSQG 306
N + G+ +++ W +G
Sbjct: 354 LNGAEMLGQNISVDWAFIRG 373
>SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1021
Score = 31.1 bits (67), Expect = 1.7
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 227 DKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRC-LTLVPRAQCAFVQ--YTSRNAAEHAA 283
D T+T+L +G NVT D+ G ++ YG+ L ++P+ CAF + A ++
Sbjct: 496 DYTITSLVMGE--KNVTVDD-PGRYFMYGQKSGELVVIPKLWCAFTPSFRLTLQAKDNGR 552
Query: 284 EKTFNRLVIFGKRLTIKWGKSQGRQGLTEKN 314
E+ + + +T+K K Q + E +
Sbjct: 553 ERKHGEMTL---HVTVKCAKYQYNFSIVENS 580
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 31.1 bits (67), Expect = 1.7
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 232 TLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVP-RA----QCAFVQYTSRNAAEHAAEKT 286
TL+V NLP + E E+ F ++G ++ + LV RA +V+Y ++A A T
Sbjct: 172 TLFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSAS-TAVLT 230
Query: 287 FNRLVIFGKRLTIKWGKSQGRQG 309
++ + G+ +++ R+G
Sbjct: 231 LDKTEVKGRTISVALSNPPTRRG 253
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 30.7 bits (66), Expect = 2.2
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 230 VTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNR 289
V ++YV N+P ++E +L+ F +YG+I + + FV + R +A A + N
Sbjct: 1 VKSIYVRNVPLPMSETQLKAVFTKYGQIEKVRKI--RDYGFVYFAKRESAVQAID-GING 57
Query: 290 LVIFGKRLTI 299
I G +L +
Sbjct: 58 AYIDGCKLEV 67
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 30.7 bits (66), Expect = 2.2
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQC-------AFVQYTSRNAAEHAAEK 285
L+VGNLP TE + YG I L LV R++ FV+Y +R A A ++
Sbjct: 115 LFVGNLPFEFTETQFGDLMSPYGNIERLFLV-RSEVTGDSKGYGFVEYATRENAMQAKQQ 173
Query: 286 TFNRL--VIFGKRLTIKWGKS 304
N I G+ L + + +S
Sbjct: 174 LLNTASKYIGGRILRVAFAES 194
>SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1048
Score = 30.3 bits (65), Expect = 3.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 163 VCSFWVKGECRRGEECPYRH 182
+CS+++ G C +GE CP H
Sbjct: 365 MCSYYLNGNCSQGENCPRWH 384
Score = 29.5 bits (63), Expect = 5.2
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 159 NRPHVCSFWVKGECRRGEECPYRHEKPTDPDDPLADQN 196
N PH+C +V G+C E+C H P D AD N
Sbjct: 435 NMPHICEQYVAGKC--DEKCSGIHACPGFVIDECADGN 470
Score = 28.7 bits (61), Expect = 9.0
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 157 KRNRPHVCSFWVKGECRRGEECPYRHE 183
K NR HVC +++ +CRR + C + HE
Sbjct: 944 KCNRIHVCKKFIQRKCRR-KNCFFMHE 969
>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 966
Score = 30.3 bits (65), Expect = 3.0
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 24 CQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPGARMRFKKTEICQTCSKLKNVCQT 83
CQTC G Y+R+ + G +I TV R C G + + + C+ C K V +
Sbjct: 210 CQTCHGSGMYVRINRIAPGMVQQI----QTVCRDCGGKGEKIPEKDRCKNCHGKKVVRER 265
Query: 84 CLLDL 88
+L++
Sbjct: 266 KILEV 270
>SB_5270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 601
Score = 30.3 bits (65), Expect = 3.0
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 56 RWCPGARMRFKKTEICQTCSKLKNVCQTCLLDLEYG-LPIQVRDAALKVQDDLPRNEVNK 114
+W ARM K + QT K+ N + L D++ LP + AA + +V
Sbjct: 345 KWKKLARM-IKTKNLAQTWLKICNDASSDLDDVDAKCLPQLLTIAAFEPVAQTSDAKVVL 403
Query: 115 EYYIQNLESQLSNSDPTQPTNSLKSKGSSDLLVRLARTA 153
E + NLES+L +SD + L+ K S L RL TA
Sbjct: 404 EL-LTNLESRLMHSDYDKQIKFLRDKHDSVLEERLRNTA 441
>SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1228
Score = 29.9 bits (64), Expect = 3.9
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 3 TSKSTNTYNRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPGAR 62
T KS + + ++ P C +C G N + R + Y C+IC++ + C +
Sbjct: 641 TPKSARPHQSRVFKMEQIPQKCMSC-GKNTHARRDCKFYNAICRICNKRGHISDICMSST 699
Query: 63 MRFKKT 68
R K T
Sbjct: 700 NRKKST 705
>SB_23461| Best HMM Match : DUF504 (HMM E-Value=0.0038)
Length = 657
Score = 29.9 bits (64), Expect = 3.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 154 PYYKRNRPHVCSFWVKGECRRGEECPYRH 182
P K C F++ G+CR GE+C +H
Sbjct: 27 PDNKMEEQAACKFFLLGQCRYGEQCFNKH 55
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 29.9 bits (64), Expect = 3.9
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEI-------RCLTLVPRAQCAFVQYTSRNA 278
+D + L+VG L T++ L+ +F +YGE+ LT PR AFVQ+ ++
Sbjct: 24 KDDDIGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRG-FAFVQFKHQSE 82
Query: 279 AE 280
A+
Sbjct: 83 AD 84
>SB_47948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 29.9 bits (64), Expect = 3.9
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 94 IQVRDAAL-KVQDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSLKSKGSSD 144
IQ +AA +V+++ +E K+YY+ +L+ QL+N P + +K K D
Sbjct: 368 IQPEEAADDEVKEEAEEDETPKDYYLSDLKKQLTNLLALNPAD-MKYKNEDD 418
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 29.9 bits (64), Expect = 3.9
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQC------AFVQYTSRNAAEHAAEKT 286
+++G LP+ + ED+++ +GE+R LV + AF +Y + A +
Sbjct: 675 IFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITD-VAIQG 733
Query: 287 FNRLVIFGKRLTIKWGKSQGRQGL 310
N + + K+L ++ +Q L
Sbjct: 734 LNGMQLGDKKLIVQRASVGAKQNL 757
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 29.9 bits (64), Expect = 3.9
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRLVI 292
L+VGNL D E+E++ F +YGE+ + + F++ +R AE AA+ +
Sbjct: 55 LFVGNLID-CDEEEMKEMFKKYGEVAEVFINKEKGFGFIRLDTRLHAE-AAKAGLDMATR 112
Query: 293 FGKRLTIKW 301
G+ L +++
Sbjct: 113 KGRTLRVRF 121
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 29.9 bits (64), Expect = 3.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEIR 258
TT++V NLP N+T+ E + F + G ++
Sbjct: 20 TTIFVRNLPYNITDAEFKSAFEEIGPLK 47
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 29.5 bits (63), Expect = 5.2
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 232 TLYVGNLPDNVTEDELRGHFYQYGEI 257
T++VGNLP + + L+ +F +YGE+
Sbjct: 22 TVFVGNLPLTLKKKALKKYFSKYGEV 47
>SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1331
Score = 29.5 bits (63), Expect = 5.2
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 163 VC-SFWVKGECRRGEECPYRH 182
+C F + GEC RGE C RH
Sbjct: 923 ICREFMMSGECHRGENCKLRH 943
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 29.5 bits (63), Expect = 5.2
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 227 DKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLV 263
D+++ +++VGN+P +E++L+ F + G + LV
Sbjct: 21 DRSLRSVFVGNIPYEASEEQLKEIFSEVGPVISFRLV 57
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 29.5 bits (63), Expect = 5.2
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEI-RCLTLVPRAQ-----CAFVQYTSRNAAEHA 282
LYV N+P + E E R F YG I C L ++ C FV Y + A+ A
Sbjct: 135 LYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAA 190
>SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31)
Length = 650
Score = 29.5 bits (63), Expect = 5.2
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 159 NRPHVCSFWVKGE-CRRGEECPYRHE 183
N +CSF +GE C RG+ C Y H+
Sbjct: 62 NSSKLCSFAARGEECTRGDSCFYGHD 87
>SB_47099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 29.5 bits (63), Expect = 5.2
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 140 KGSSDLLVRLARTAPYYKRNRPHVCSFWVKGECRRGEE 177
K D LV A T Y + +P V + V GECRR EE
Sbjct: 72 KAVEDALVYAASTYDYSRFKKPDV--YLVSGECRRYEE 107
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 29.5 bits (63), Expect = 5.2
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 227 DKTVTTLYVGNLPDNVTEDELRGHFYQYGEIR--CLTLVPRAQC----AFVQYTSRNAAE 280
+++ T +++G +P + EDEL + GEIR L + P AF +T + +A
Sbjct: 149 EESGTEVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTEQTSAY 208
Query: 281 HAAEKTFNRLVIFGKRLTIKWGKSQGR 307
A ++ + G+RL I +S R
Sbjct: 209 QAITTLNDKDIRPGRRLAICKSRSNSR 235
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 29.1 bits (62), Expect = 6.8
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPR----AQCAFVQYTSRNAAEH 281
E + + +++G L N TE+ L+ +F Q+G I ++ R FV Y S ++
Sbjct: 45 ESEKLRKIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRDGRSRGFGFVTYESSDSVNE 104
Query: 282 AAEK 285
+K
Sbjct: 105 VLKK 108
>SB_2244| Best HMM Match : zf-CCCH (HMM E-Value=0.004)
Length = 445
Score = 29.1 bits (62), Expect = 6.8
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 157 KRNRPHVCSFWVKGE-CRRGEECPYRH 182
+RN P VC +V C RGE+C + H
Sbjct: 411 RRNPPPVCRHFVSNRGCLRGEQCHFLH 437
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 28.7 bits (61), Expect = 9.0
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 228 KTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEK 285
++ T + NLP +ELR F +G++ + L P A ++ + A A +K
Sbjct: 421 RSKTVIVAKNLPYGTNAEELRTLFSAFGQLGRVILPPSGITALIEIPEPSLARKAFQK 478
>SB_13697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 28.7 bits (61), Expect = 9.0
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 102 KVQDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSLKSKGSSDLLVR---LARTAPYYKR 158
+++D R E + + +SQ S +D +L GSS + V+ A+T KR
Sbjct: 62 RLEDAARRREFAGNWRRKKSDSQASPNDVVMEAKNLSCSGSSAIWVQSRSAAKTRRQTKR 121
Query: 159 NRPHVCS----FWVKGECRRGEECPYRHEKPTDP 188
C+ +W R+G C Y+ K T P
Sbjct: 122 RPDIFCTPATGYWGAVYNRKGRSC-YKMVKATAP 154
>SB_30827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 28.7 bits (61), Expect = 9.0
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 92 LPIQVRDAALKVQDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSLKSKGSSDLLVRLAR 151
+P ++A +D + N ++ + + S ++N + P++ + + + L R R
Sbjct: 2 IPRGALNSAAIDEDPITMNTIDPVTHTTSASSDVTNENHGSPSDDVTATSTYQSLDRTIR 61
Query: 152 TAPYYKRNRPHVCSFWVKGEC--RRGEECPYRHEKPTDPD 189
T+P + C + G RG E Y T PD
Sbjct: 62 TSPDGRGRARGPCEYEAVGSSGPERGGEGQYAELTSTCPD 101
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.135 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,907,235
Number of Sequences: 59808
Number of extensions: 507028
Number of successful extensions: 1212
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1159
Number of HSP's gapped (non-prelim): 81
length of query: 409
length of database: 16,821,457
effective HSP length: 84
effective length of query: 325
effective length of database: 11,797,585
effective search space: 3834215125
effective search space used: 3834215125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -