GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002363-TA|BGIBMGA002363-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR000571|Zinc finger, CCCH-type
         (409 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.      25   3.7  
AY735443-1|AAU08018.1|  163|Anopheles gambiae bursicon protein.        24   8.6  
AY735442-1|AAU08017.1|  163|Anopheles gambiae bursicon protein.        24   8.6  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    24   8.6  

>AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.
          Length = 565

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 172 CRRGEECPYRHEKPTDPDDPLADQN 196
           C +  + PY     T P+ PLAD N
Sbjct: 155 CNQDLQPPYSPRTTTTPEPPLADPN 179


>AY735443-1|AAU08018.1|  163|Anopheles gambiae bursicon protein.
          Length = 163

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 21  PILCQTCLGD-NPYIRMTKEKYG---KECKICS----RPFTVFRWCPGARMRFKKTEICQ 72
           PI    C+G    YI+++  K     + C  C     R  +V  +CP A+   KK     
Sbjct: 57  PIPSFACIGRCASYIQVSGSKIWQMERSCMCCQESGEREASVSLFCPKAKNGEKKFRKVS 116

Query: 73  TCSKLKNVCQTC 84
           T + L+ +C+ C
Sbjct: 117 TKAPLECMCRPC 128


>AY735442-1|AAU08017.1|  163|Anopheles gambiae bursicon protein.
          Length = 163

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 21  PILCQTCLGD-NPYIRMTKEKYG---KECKICS----RPFTVFRWCPGARMRFKKTEICQ 72
           PI    C+G    YI+++  K     + C  C     R  +V  +CP A+   KK     
Sbjct: 57  PIPSFACIGRCASYIQVSGSKIWQMERSCMCCQESGEREASVSLFCPKAKNGEKKFRKVS 116

Query: 73  TCSKLKNVCQTC 84
           T + L+ +C+ C
Sbjct: 117 TKAPLECMCRPC 128


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 6/73 (8%)

Query: 141 GSSDLLVRLARTAPYYKRNRPHVCSFWVKGECRRGEECPYRHEKPTD---PDDPLADQNI 197
           G  D  +    T   Y R   HVC F    EC R   CP   E         +   +  +
Sbjct: 919 GEVDFHLSQVLTGHGYFREYLHVCGFAPSAECPR---CPGSVESVAHVLFQCEVFHEIRV 975

Query: 198 KDRYYGVNDPVAE 210
           +   YG +DPV E
Sbjct: 976 ELLGYGTSDPVNE 988


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.135    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 383,546
Number of Sequences: 2123
Number of extensions: 14917
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 4
length of query: 409
length of database: 516,269
effective HSP length: 66
effective length of query: 343
effective length of database: 376,151
effective search space: 129019793
effective search space used: 129019793
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)