Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002363-TA|BGIBMGA002363-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR000571|Zinc finger, CCCH-type
(409 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 425 e-119
Z78536-3|CAB01717.1| 270|Caenorhabditis elegans Hypothetical pr... 46 6e-05
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 44 2e-04
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 44 2e-04
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 44 2e-04
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 44 2e-04
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 44 2e-04
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 44 2e-04
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 44 2e-04
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 44 3e-04
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 42 6e-04
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 41 0.002
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 40 0.004
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 40 0.004
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 39 0.007
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 38 0.013
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 38 0.013
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 38 0.017
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 37 0.023
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 37 0.023
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 37 0.023
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 37 0.023
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 37 0.023
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 37 0.023
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 36 0.039
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 36 0.052
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 36 0.052
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 36 0.069
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 36 0.069
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 36 0.069
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 35 0.091
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 35 0.12
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 34 0.16
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 34 0.16
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 34 0.21
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 33 0.37
Z32683-13|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 33 0.49
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 32 0.64
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 32 0.64
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 32 0.64
Z81084-7|CAB03111.1| 312|Caenorhabditis elegans Hypothetical pr... 32 0.85
Z81037-10|CAB02754.1| 312|Caenorhabditis elegans Hypothetical p... 32 0.85
X95609-1|CAA64867.1| 312|Caenorhabditis elegans mec-8 protein. 32 0.85
X95608-1|CAA64866.1| 312|Caenorhabditis elegans mec-8 protein. 32 0.85
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 32 0.85
Z74476-2|CAA98962.1| 200|Caenorhabditis elegans Hypothetical pr... 31 1.5
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 31 1.5
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 31 1.5
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 31 1.5
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 31 2.0
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 31 2.0
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 31 2.0
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 31 2.0
U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical pr... 30 2.6
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 30 2.6
AL117204-24|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 30 2.6
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 30 3.4
AL117204-23|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 30 3.4
AF016432-2|AAB65380.2| 522|Caenorhabditis elegans Hypothetical ... 30 3.4
U46674-4|AAA85756.1| 574|Caenorhabditis elegans Hypothetical pr... 29 4.5
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 29 4.5
AJ345015-1|CAC87812.1| 577|Caenorhabditis elegans FEH-1 protein... 29 4.5
AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe... 29 4.5
AC025723-9|AAN84831.1| 640|Caenorhabditis elegans Mammalian fe6... 29 4.5
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 29 7.9
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 29 7.9
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 29 7.9
AC025723-11|AAN84832.2| 554|Caenorhabditis elegans Mammalian fe... 29 7.9
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca... 29 7.9
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 425 bits (1048), Expect = e-119
Identities = 185/327 (56%), Positives = 240/327 (73%), Gaps = 8/327 (2%)
Query: 1 MATSKST-NTYNRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCP 59
M+ SKS+ + YNR+NWED+DFPILC+TCLG+NPY+RM K+KYG+ECKIC RPFT FRW P
Sbjct: 1 MSMSKSSYSQYNRKNWEDSDFPILCETCLGNNPYMRMMKDKYGRECKICERPFTTFRWQP 60
Query: 60 GARMRFKKTEICQTCSKLKNVCQTCLLDLEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQ 119
G R+K TE+CQTC+K+KNVCQTC+ DLEYGLP+QVRD L++ D++P+ N+++++Q
Sbjct: 61 GKGARYKNTELCQTCAKVKNVCQTCMFDLEYGLPVQVRDHELQIADNIPKQGANRDFFLQ 120
Query: 120 NLESQLSNSDPTQPTNSLKS---KGSSDLLVRLARTAPYYKRNRPHVCSFWVKGECRRGE 176
N+E L D TQP + + + + D L R+ RT PYYKRN PH+CSF+VKGEC+RGE
Sbjct: 121 NVERTLGQGDGTQPIAQIANNMDQAAHDRLRRMGRTQPYYKRNAPHICSFFVKGECKRGE 180
Query: 177 ECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKXXXXXXXXXXXXXXEDKTVTTLYVG 236
ECPYRHEKPTDPDDPL+ QNI+DRYYG NDPVAEK D T+TTLY+G
Sbjct: 181 ECPYRHEKPTDPDDPLSRQNIRDRYYGTNDPVAEKILNRAAAAPTLSPPADTTITTLYIG 240
Query: 237 NL----PDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRLVI 292
NL VTE +L FYQYG+IRCL ++ CAF+++T+R AAE AAE++FN+ I
Sbjct: 241 NLGPSGAQQVTEKDLNDFFYQYGDIRCLRVLTEKGCAFIEFTTREAAERAAERSFNKTFI 300
Query: 293 FGKRLTIKWGKSQGRQGLTEKNDGVPM 319
GKRLTI+WG+ Q ++ N P+
Sbjct: 301 KGKRLTIRWGEPQAKRAADNSNYVTPV 327
>Z78536-3|CAB01717.1| 270|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 270
Score = 45.6 bits (103), Expect = 6e-05
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRL 290
T++YVGN+ T+ +LR F YG+I + + + AFV+Y + A A + N
Sbjct: 129 TSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIME-MNGK 187
Query: 291 VIFGKRLTIKWGKSQ 305
+ G ++ WG++Q
Sbjct: 188 EMAGNQVRCSWGRTQ 202
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 44.0 bits (99), Expect = 2e-04
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRL 290
T++YVGN+ ++TEDE+R F +G I + + AFV++ +++AA A + N
Sbjct: 128 TSVYVGNIA-SLTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQ-MNNQ 185
Query: 291 VIFGKRLTIKWGKSQGRQGLT 311
+ G+ + WGK+ G G T
Sbjct: 186 DVGGQLVRCSWGKT-GDTGKT 205
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 44.0 bits (99), Expect = 2e-04
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRL 290
T++YVGN+ ++TEDE+R F +G I + + AFV++ +++AA A + N
Sbjct: 138 TSVYVGNIA-SLTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQ-MNNQ 195
Query: 291 VIFGKRLTIKWGKSQGRQGLT 311
+ G+ + WGK+ G G T
Sbjct: 196 DVGGQLVRCSWGKT-GDTGKT 215
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 44.0 bits (99), Expect = 2e-04
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRL 290
T++YVGN+ ++TEDE+R F +G I + + AFV++ +++AA A + N
Sbjct: 241 TSVYVGNIA-SLTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQ-MNNQ 298
Query: 291 VIFGKRLTIKWGKSQGRQGLT 311
+ G+ + WGK+ G G T
Sbjct: 299 DVGGQLVRCSWGKT-GDTGKT 318
Score = 43.6 bits (98), Expect = 3e-04
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 232 TLYVGNLPDNVTEDELRGHFYQYGEIRCLTLV---PRAQCAFVQYTSRNAAEHAAEKTFN 288
TLYVGNL VTED + F Q G + ++ AFV+++ A A + T N
Sbjct: 47 TLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDPYAFVEFSDHGQASQALQ-TMN 105
Query: 289 RLVIFGKRLTIKWGKSQGRQ 308
+ ++ + + + W G+Q
Sbjct: 106 KRLLLDREMKVNWAVEPGQQ 125
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 44.0 bits (99), Expect = 2e-04
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRL 290
T++YVGN+ ++TEDE+R F +G I + + AFV++ +++AA A + N
Sbjct: 209 TSVYVGNIA-SLTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQ-MNNQ 266
Query: 291 VIFGKRLTIKWGKSQGRQGLT 311
+ G+ + WGK+ G G T
Sbjct: 267 DVGGQLVRCSWGKT-GDTGKT 286
Score = 30.3 bits (65), Expect = 2.6
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 232 TLYVGNLPDNVTEDELRGHFYQYGEI 257
TLYVGNL VTED + F Q G +
Sbjct: 47 TLYVGNLDSTVTEDFIATLFNQIGSV 72
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 44.0 bits (99), Expect = 2e-04
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTL-VP---RAQCAFVQY-TSRNAAE 280
+D+ TL+VGN+P +V E E+R F ++G++ + + P A AFV + T A +
Sbjct: 164 DDEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQTVDQAIQ 223
Query: 281 HAAEKTFNRLVIFGKRLTIKWGKSQ 305
AE+ + G R+ I +GKSQ
Sbjct: 224 AKAEEQDRPIRAGGSRMKIGYGKSQ 248
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 44.0 bits (99), Expect = 2e-04
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTL-VP---RAQCAFVQY-TSRNAAE 280
+D+ TL+VGN+P +V E E+R F ++G++ + + P A AFV + T A +
Sbjct: 164 DDEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQTVDQAIQ 223
Query: 281 HAAEKTFNRLVIFGKRLTIKWGKSQ 305
AE+ + G R+ I +GKSQ
Sbjct: 224 AKAEEQDRPIRAGGSRMKIGYGKSQ 248
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 44.0 bits (99), Expect = 2e-04
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTL-VP---RAQCAFVQY-TSRNAAE 280
+D+ TL+VGN+P +V E E+R F ++G++ + + P A AFV + T A +
Sbjct: 141 DDEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQTVDQAIQ 200
Query: 281 HAAEKTFNRLVIFGKRLTIKWGKSQ 305
AE+ + G R+ I +GKSQ
Sbjct: 201 AKAEEQDRPIRAGGSRMKIGYGKSQ 225
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 43.6 bits (98), Expect = 3e-04
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 232 TLYVGNLPDNVTEDELRGHFYQYGEIRCLTLV------PRAQCAFVQYTSRNAAEHAAEK 285
TL+VG + +E +LR F YG+I+ LT+V PR AF++Y+ + A H A K
Sbjct: 105 TLFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGY-AFIEYSDK-AEMHTAYK 162
Query: 286 TFNRLVIFGKRLTIKWGKSQ 305
+ + + GKRL + + + +
Sbjct: 163 KADGIKVDGKRLVVDYERGR 182
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 42.3 bits (95), Expect = 6e-04
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRL 290
T++YVGN+ N+ EDE+R F ++G I + AFV++ ++ +A A + N
Sbjct: 256 TSVYVGNIA-NLGEDEIRRAFDRFGPINEVRTFKIQGYAFVKFETKESAARAIVQ-MNNA 313
Query: 291 VIFGKRLTIKWGKSQGRQGLTEKNDG 316
I G+ + WGKS +E+ G
Sbjct: 314 DIGGQIVRCSWGKSGDSGKPSERGSG 339
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 40.7 bits (91), Expect = 0.002
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 232 TLYVGNLPDNVTEDELRGHFYQYGEIRCLTLV-------PRAQCAFVQYTSRNAAEHAAE 284
++YVGN P TED+L +F Q G + + +V PR AFV++T AA+ A +
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRG-FAFVEFTEEAAAQRAVD 63
Query: 285 KTFNRLVIFGKRLTIKWGKSQ 305
+ FN + G+ L + +++
Sbjct: 64 Q-FNGVDFNGRALRVNLAQNR 83
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 39.5 bits (88), Expect = 0.004
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVP-RAQC-AFVQYTSRNAAEHAAEKTFNRL 290
+YVGNLP +V E E+ F++YG I+ + + R AFV++ AE A + +
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAV-RARDGY 69
Query: 291 VIFGKRLTIKWGKSQGRQG 309
G+R+ +++ + G +G
Sbjct: 70 EFDGRRIRVEFTRGVGPRG 88
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 39.5 bits (88), Expect = 0.004
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVP-RAQC-AFVQYTSRNAAEHAAEKTFNRL 290
+YVGNLP +V E E+ F++YG I+ + + R AFV++ AE A + +
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAV-RARDGY 69
Query: 291 VIFGKRLTIKWGKSQGRQG 309
G+R+ +++ + G +G
Sbjct: 70 EFDGRRIRVEFTRGVGPRG 88
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 38.7 bits (86), Expect = 0.007
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCL-TLVPRAQ--------CAFVQYTSR 276
+D T +YV N+P +VTED+L F +G + L L PR++ CAFV + SR
Sbjct: 195 DDPYTTNVYVSNIPHSVTEDDLLFTFGSFGPLAALKILYPRSEEERRRPHICAFVAFMSR 254
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 37.9 bits (84), Expect = 0.013
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRLVI 292
L+VGNLP+ V E EL+ F +G+I L + AF++ +R AE A E R +I
Sbjct: 118 LFVGNLPNEVKETELKELFSPHGDIAECYLSGKG-FAFLRLDTRAHAESAKEAIDGR-II 175
Query: 293 FGKRLTIKW 301
G+++ +++
Sbjct: 176 HGRQVRVRF 184
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 37.9 bits (84), Expect = 0.013
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRLVI 292
L+VGNLP+ V E EL+ F +G+I L + AF++ +R AE A E R +I
Sbjct: 118 LFVGNLPNEVKETELKELFSPHGDIAECYLSGKG-FAFLRLDTRAHAESAKEAIDGR-II 175
Query: 293 FGKRLTIKW 301
G+++ +++
Sbjct: 176 HGRQVRVRF 184
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 37.5 bits (83), Expect = 0.017
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 232 TLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRLV 291
TL++ +P N+ E++L+ GE + ++ CA++ +R +A K +
Sbjct: 526 TLWLKKIPTNIVENDLKQAVESCGEASRVKVIGNRACAYITMENRRSANDVVSK-MREVS 584
Query: 292 IFGKRLTIKWGKSQG 306
+ K + + W +S G
Sbjct: 585 VAKKMVKVYWARSPG 599
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 37.1 bits (82), Expect = 0.023
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRLVI 292
+Y+G L V+E ++ F YG+IR + L + FV++ + AE A N +
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLL--KNGFGFVEFDDKRDAEDAVH-DLNGKEL 61
Query: 293 FGKRLTIKWGKSQGRQG 309
G+R+ + + K +G G
Sbjct: 62 GGERVILDYSKPRGGGG 78
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 37.1 bits (82), Expect = 0.023
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRLVI 292
+Y+G L V+E ++ F YG+IR + L + FV++ + AE A N +
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLL--KNGFGFVEFDDKRDAEDAVH-DLNGKEL 61
Query: 293 FGKRLTIKWGKSQGRQG 309
G+R+ + + K +G G
Sbjct: 62 GGERVILDYSKPRGGGG 78
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 37.1 bits (82), Expect = 0.023
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRLVI 292
+Y+G L V+E ++ F YG+IR + L + FV++ + AE A N +
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLL--KNGFGFVEFDDKRDAEDAVH-DLNGKEL 61
Query: 293 FGKRLTIKWGKSQGRQG 309
G+R+ + + K +G G
Sbjct: 62 GGERVILDYSKPRGGGG 78
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 37.1 bits (82), Expect = 0.023
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQ-CAFVQYTSRNAAEHAAEKTFNRLV 291
+YVG LP + T EL F ++G IR + + R AFV+Y AE A + +
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAV-RALDGSR 63
Query: 292 IFGKRLTIKWGKSQGRQG 309
I G R ++ Q R G
Sbjct: 64 ICGVRARVELSTGQRRGG 81
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 37.1 bits (82), Expect = 0.023
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQ-CAFVQYTSRNAAEHAAEKTFNRLV 291
+YVG LP + T EL F ++G IR + + R AFV+Y AE A + +
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAV-RALDGSR 63
Query: 292 IFGKRLTIKWGKSQGRQG 309
I G R ++ Q R G
Sbjct: 64 ICGVRARVELSTGQRRGG 81
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 37.1 bits (82), Expect = 0.023
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQ-CAFVQYTSRNAAEHAAEKTFNRLV 291
+YVG LP + T EL F ++G IR + + R AFV+Y AE A + +
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAV-RALDGSR 63
Query: 292 IFGKRLTIKWGKSQGRQG 309
I G R ++ Q R G
Sbjct: 64 ICGVRARVELSTGQRRGG 81
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 36.3 bits (80), Expect = 0.039
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQ-----CAFVQYTSRNAAEHAAEK 285
T L V NLP TE +LR F +YG+I +L + AFV + +A +A K
Sbjct: 3 TRLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAK 62
Query: 286 TFNRLVIFGKRLTIK 300
+ N+ K+LT++
Sbjct: 63 S-NQTFFNSKKLTVE 76
Score = 32.3 bits (70), Expect = 0.64
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQ-------CAFVQYTSRNA 278
E T L V NLP + E+ F +G ++ + + + FV + S +
Sbjct: 743 EQGECTKLLVRNLPFEASVKEVETLFETFGAVKTIRIPKKPGQKQQHRGFGFVDFISADE 802
Query: 279 AEHAAEKTFNRLVIFGKRLTIKWGK 303
A A + + ++G+RL ++W K
Sbjct: 803 AHRAFDSLVHSTHLYGRRLVLEWAK 827
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 35.9 bits (79), Expect = 0.052
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 230 VTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCA-------FVQYTSRNAAEHA 282
+T+L + NL T ++LR F +YG+I + +PR + + FV++ R AEHA
Sbjct: 18 LTSLKIDNLSYQTTPNDLRRTFERYGDIGDVH-IPRDKYSRQSKGFGFVRFYERRDAEHA 76
Query: 283 AEKTFNRLVIFGKRLTIKWGK 303
++T +LV G+ L + K
Sbjct: 77 LDRTDGKLV-DGRELRVTLAK 96
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 35.9 bits (79), Expect = 0.052
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 230 VTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCA-------FVQYTSRNAAEHA 282
+T+L + NL T ++LR F +YG+I + +PR + + FV++ R AEHA
Sbjct: 18 LTSLKIDNLSYQTTPNDLRRTFERYGDIGDVH-IPRDKYSRQSKGFGFVRFYERRDAEHA 76
Query: 283 AEKTFNRLVIFGKRLTIKWGK 303
++T +LV G+ L + K
Sbjct: 77 LDRTDGKLV-DGRELRVTLAK 96
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 35.5 bits (78), Expect = 0.069
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVP------RAQCAFVQYTSRNAA 279
+D L+VG +P N+ E +LR F Q+G+I T++ CAF+ Y R++A
Sbjct: 24 KDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSA 83
Score = 31.1 bits (67), Expect = 1.5
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQ-----CAFVQY 273
L++G L +EDE+R F +GE+ +T++ A CAFV+Y
Sbjct: 126 LFIGMLSKQQSEDEVRALFATFGELDEVTVLRGADGASKGCAFVKY 171
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 35.5 bits (78), Expect = 0.069
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 150 ARTAPYYKRNRPHVCS-FWVKGECRRGEECPYRHEKPTDPDDPLADQN 196
+RT PY R+ C F +G C RG++CPY H + D + D+N
Sbjct: 198 SRTPPYKSRSSRRRCKDFEERGYCIRGDQCPYYHGR----DPVVVDEN 241
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 35.5 bits (78), Expect = 0.069
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVP------RAQCAFVQYTSRNAA 279
+D L+VG +P N+ E +LR F Q+G+I T++ CAF+ Y R++A
Sbjct: 24 KDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSA 83
Score = 31.1 bits (67), Expect = 1.5
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQ-----CAFVQY 273
L++G L +EDE+R F +GE+ +T++ A CAFV+Y
Sbjct: 126 LFIGMLSKQQSEDEVRALFATFGELDEVTVLRGADGASKGCAFVKY 171
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 35.1 bits (77), Expect = 0.091
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 232 TLYVGNLPDNVTEDELRGHFYQYGEIRCLTLV-------PRAQCAFVQYTSRNAAEHAAE 284
++YVGN+P TE+E+ +F G + + +V PR AFV+++ A+ A E
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRG-FAFVEFSEEAGAQRAVE 65
Query: 285 KTFNRLVIFGKRLTIKW 301
+ N + G+ L + +
Sbjct: 66 Q-LNGVAFNGRNLRVNY 81
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 34.7 bits (76), Expect = 0.12
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 230 VTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLV-------PRAQCAFVQYTSRNAAEHA 282
+ ++YVGN P TE+EL F G+I + +V PR AF+++ +A+ A
Sbjct: 4 IFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRG-FAFIEFAEEGSAQRA 62
Query: 283 AEK 285
E+
Sbjct: 63 VEQ 65
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 34.3 bits (75), Expect = 0.16
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCL------TLVPRAQCAFVQYTSRNAAEHAAEKT 286
++VG LP + +E +LR HF Q+G++ + R AF+ + +A+ A+ +T
Sbjct: 112 VFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQT 171
Score = 30.3 bits (65), Expect = 2.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEI 257
EDK + +VG + V ++L HF QYGE+
Sbjct: 27 EDKKI---FVGGISPEVNNEDLSSHFTQYGEV 55
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 34.3 bits (75), Expect = 0.16
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCL------TLVPRAQCAFVQYTSRNAAEHAAEKT 286
++VG LP + +E +LR HF Q+G++ + R AF+ + +A+ A+ +T
Sbjct: 112 VFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQT 171
Score = 30.3 bits (65), Expect = 2.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEI 257
EDK + +VG + V ++L HF QYGE+
Sbjct: 27 EDKKI---FVGGISPEVNNEDLSSHFTQYGEV 55
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 33.9 bits (74), Expect = 0.21
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 163 VCSFWVKGECRRGEECPYRHE 183
VC W++G C++G++C + HE
Sbjct: 81 VCKHWLRGLCKKGDQCEFLHE 101
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 33.1 bits (72), Expect = 0.37
Identities = 16/70 (22%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQ-CAFVQYTSRNAAEHAAEKTFNRLV 291
L+ N+P+ ++++ F Q+ +R + +P + AF++Y S + +E A + N +
Sbjct: 145 LFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALDNFRI 204
Query: 292 IFGKRLTIKW 301
+++T+K+
Sbjct: 205 TPTQQITVKF 214
>Z32683-13|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 32.7 bits (71), Expect = 0.49
Identities = 19/82 (23%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAF------VQYTSRNAAEHAAEKT 286
++V N+ + TED++ F +YG+I+ + L + F V+Y ++ A A +++
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQS 116
Query: 287 FNRLVIFGKRLTIKWGKSQGRQ 308
N + G+ + + W +G++
Sbjct: 117 -NDTDLLGQNVKVDWCFVKGKK 137
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 32.3 bits (70), Expect = 0.64
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 228 KTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTL----VPRAQC--AFVQYTSRNAAEH 281
+T TLYVGNL ED++ F + G++R + + + C FV+Y +R AE
Sbjct: 34 RTSCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAEL 93
Query: 282 AAEKTFN 288
A + N
Sbjct: 94 ALQNISN 100
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 32.3 bits (70), Expect = 0.64
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEIR-CLTLVPR----AQCAFVQYTSRNAAE 280
E++ L++G L E+ LR F ++G I C L + CAFV +T+R+ A
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAV 196
Query: 281 HAAEKTFNRLVIFG--KRLTIKWGKSQGRQGLTEKN 314
A ++ + + G L +K+ +Q + + K+
Sbjct: 197 VATKEMHHSQTMEGCSAPLVVKFADTQKDKDVKTKS 232
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 32.3 bits (70), Expect = 0.64
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEIR-CLTLVPR----AQCAFVQYTSRNAAE 280
E++ L++G L E+ LR F ++G I C L + CAFV +T+R+ A
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAV 196
Query: 281 HAAEKTFNRLVIFG--KRLTIKWGKSQGRQGLTEKN 314
A ++ + + G L +K+ +Q + + K+
Sbjct: 197 VATKEMHHSQTMEGCSAPLVVKFADTQKDKDVKTKS 232
>Z81084-7|CAB03111.1| 312|Caenorhabditis elegans Hypothetical
protein F46A9.6 protein.
Length = 312
Score = 31.9 bits (69), Expect = 0.85
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPR-AQC-AFVQYTSRNAAEHA 282
+TL+V NL V ED LRG F + L L + C AFV+Y+ A A
Sbjct: 228 STLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQA 281
>Z81037-10|CAB02754.1| 312|Caenorhabditis elegans Hypothetical
protein F46A9.6 protein.
Length = 312
Score = 31.9 bits (69), Expect = 0.85
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPR-AQC-AFVQYTSRNAAEHA 282
+TL+V NL V ED LRG F + L L + C AFV+Y+ A A
Sbjct: 228 STLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQA 281
>X95609-1|CAA64867.1| 312|Caenorhabditis elegans mec-8 protein.
Length = 312
Score = 31.9 bits (69), Expect = 0.85
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPR-AQC-AFVQYTSRNAAEHA 282
+TL+V NL V ED LRG F + L L + C AFV+Y+ A A
Sbjct: 228 STLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQA 281
>X95608-1|CAA64866.1| 312|Caenorhabditis elegans mec-8 protein.
Length = 312
Score = 31.9 bits (69), Expect = 0.85
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPR-AQC-AFVQYTSRNAAEHA 282
+TL+V NL V ED LRG F + L L + C AFV+Y+ A A
Sbjct: 228 STLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQA 281
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 31.9 bits (69), Expect = 0.85
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQ---CAFVQY----TSRNAAEH-AAE 284
LY+ NLP +T +E+ F ++G +R + + A+ AFV Y ++ A EH +
Sbjct: 21 LYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEHLSGY 80
Query: 285 KTFNR-LVIFGKRLTIKWGKSQGRQGLTEKND 315
NR LV+ + T W + + T+ D
Sbjct: 81 NVSNRYLVVLYYQATKAWKRMDTEKARTKLED 112
>Z74476-2|CAA98962.1| 200|Caenorhabditis elegans Hypothetical
protein W05B10.2 protein.
Length = 200
Score = 31.1 bits (67), Expect = 1.5
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 157 KRNRPHVCSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKD--RYYGVNDPVAE 210
++ C ++KG+CR G++C + H D + + +I ++Y P A+
Sbjct: 132 RKKSKFTCKNYLKGKCRFGDKCRFSHPVHNRSSDAVNEVSISSEAKFYTTETPEAQ 187
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 31.1 bits (67), Expect = 1.5
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVP-RAQCAFVQYTSRNAAEHAAEKTFNRLV 291
L+ NLPD+ T + L F Q+ ++ + +VP R AFV++ + + A A T N
Sbjct: 134 LFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFDTDSLA-IPARTTLNNFK 192
Query: 292 I 292
I
Sbjct: 193 I 193
Score = 30.7 bits (66), Expect = 2.0
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 231 TTLYVGNLPDNVTEDELR----GHFYQYGEI---RCL-TLVPRAQCAFVQYTSRNAAEHA 282
+TLY+ NL + + DELR F Q+GEI C TL R Q A V + AA A
Sbjct: 8 STLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQ-AHVIFKELPAAS-A 65
Query: 283 AEKTFNRLVIFGKRLTIKWGKSQGRQGLTEK 313
A + N + K + I++ + EK
Sbjct: 66 AREALNGFPFYEKPMRIQFAREDSDVVAQEK 96
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 31.1 bits (67), Expect = 1.5
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQ-----CAFVQYTSRNAAEHAAEKTF 287
++VG P + TE ELR HF ++ ++ + +V F+ + + + AE + T
Sbjct: 68 IFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEEIRKLTP 127
Query: 288 NRLVIFGKRLTI 299
+L ++L +
Sbjct: 128 KQLEFRSRKLNL 139
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 31.1 bits (67), Expect = 1.5
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQ-----CAFVQYTSRNAAEHAAEKTF 287
++VG P + TE ELR HF ++ ++ + +V F+ + + + AE + T
Sbjct: 69 IFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEEIRKLTP 128
Query: 288 NRLVIFGKRLTI 299
+L ++L +
Sbjct: 129 KQLEFRSRKLNL 140
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 30.7 bits (66), Expect = 2.0
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 231 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLV------PRAQCAFVQYTSRNAAEHAAE 284
T L + LP +T++E+R F GEI LV FV Y A A
Sbjct: 42 TNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAV- 100
Query: 285 KTFNRLVIFGKRLTIKWGKSQGRQ 308
+FN L + K + + + + Q
Sbjct: 101 SSFNGLRLQNKTIKVSYARPSNDQ 124
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 30.7 bits (66), Expect = 2.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEI 257
E + + ++VG L N T+D +R + Q+GEI
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEI 49
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 30.7 bits (66), Expect = 2.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEI 257
E + + ++VG L N T+D +R + Q+GEI
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEI 49
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 30.7 bits (66), Expect = 2.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 226 EDKTVTTLYVGNLPDNVTEDELRGHFYQYGEI 257
E + + ++VG L N T+D +R + Q+GEI
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEI 49
>U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical
protein C18A3.5c protein.
Length = 103
Score = 30.3 bits (65), Expect = 2.6
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 232 TLYVGNLPDNVTEDELRGHFYQYGEI 257
TLYVGNL VTED + F Q G +
Sbjct: 47 TLYVGNLDSTVTEDFIATLFNQIGSV 72
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 30.3 bits (65), Expect = 2.6
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEI 257
L+VGNLP+ V E EL+ F +G+I
Sbjct: 118 LFVGNLPNEVKETELKELFSPHGDI 142
>AL117204-24|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 30.3 bits (65), Expect = 2.6
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 164 CSFWVK-GECRRGEECPYRHEKPT 186
CSF+ K G CR G++C H PT
Sbjct: 26 CSFFFKTGACRHGDKCSRAHHTPT 49
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 29.9 bits (64), Expect = 3.4
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 232 TLYVGNLPDNVTEDELRGHFYQYGE-IRC------LTLVPRAQCAFVQYTSRNAAEHAAE 284
T V NLP + EDELR F + G IR +T +P+ AFV + SR+ A A
Sbjct: 177 TCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKG-FAFVTFESRDDAARAIA 235
Query: 285 KTFNRLVIFGKRLTIKW 301
+ N + ++ L ++W
Sbjct: 236 E-LNDIRMYHMVLKVEW 251
>AL117204-23|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 29.9 bits (64), Expect = 3.4
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 232 TLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQC------AFVQYTSRNAAEHAAEK 285
TLYVG ++VTE L F +G++ +++ + FV++ A A +
Sbjct: 12 TLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAID- 70
Query: 286 TFNRLVIFGKRLTIKWGK 303
N +FGK + + + +
Sbjct: 71 NMNESELFGKTIRVNFAR 88
>AF016432-2|AAB65380.2| 522|Caenorhabditis elegans Hypothetical
protein C07G3.8 protein.
Length = 522
Score = 29.9 bits (64), Expect = 3.4
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 228 KTVTTLYVG-----NLPDNVTEDELRGHFYQYGEIRCLTLV 263
KT+T Y G P N T D G +Y Y RC L+
Sbjct: 85 KTITENYEGIVNFLTTPPNTTSDSCEGSYYFYESFRCTALI 125
>U46674-4|AAA85756.1| 574|Caenorhabditis elegans Hypothetical
protein T26A8.4 protein.
Length = 574
Score = 29.5 bits (63), Expect = 4.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 163 VCSFWVKGECRRGEECPYRHE 183
+C F+ +G CR G+ C Y H+
Sbjct: 170 ICKFFREGYCRDGDNCLYSHQ 190
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 29.5 bits (63), Expect = 4.5
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLV--PRAQC----AFVQYTSRNAAEHAAEKT 286
+YVG++P +V ED L F + G+I L L+ P + AFV Y ++ A AA+
Sbjct: 202 IYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTY 261
Query: 287 FNRLVIFGKRLTI 299
+ GK L +
Sbjct: 262 DGHEISTGKPLKV 274
>AJ345015-1|CAC87812.1| 577|Caenorhabditis elegans FEH-1 protein
protein.
Length = 577
Score = 29.5 bits (63), Expect = 4.5
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 109 RNEVNKEYYIQNLESQLSNSDPTQPTNSLKSKGSSDLLVRLARTAPYYKRNRPHVCSFWV 168
R + +Y Q+ L+ D ++ S+G + VR +R +W
Sbjct: 21 RRNMAVDYSSQDFRQSLAAIDQASRDGAI-SRGEDGVRVRQIGDTTIMTEHRDPYSFYWQ 79
Query: 169 KGECRRGEECPYRHEKPTD 187
+ RR E P R PTD
Sbjct: 80 LDQARREAESPPRRPPPTD 98
>AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform a protein.
Length = 691
Score = 29.5 bits (63), Expect = 4.5
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 109 RNEVNKEYYIQNLESQLSNSDPTQPTNSLKSKGSSDLLVRLARTAPYYKRNRPHVCSFWV 168
R + +Y Q+ L+ D ++ S+G + VR +R +W
Sbjct: 139 RRNMAVDYSSQDFRQSLAAIDQASRDGAI-SRGEDGVRVRQIGDTTIMTEHRDPYSFYWQ 197
Query: 169 KGECRRGEECPYRHEKPTD 187
+ RR E P R PTD
Sbjct: 198 LDQARREAESPPRRPPPTD 216
>AC025723-9|AAN84831.1| 640|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform b protein.
Length = 640
Score = 29.5 bits (63), Expect = 4.5
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 109 RNEVNKEYYIQNLESQLSNSDPTQPTNSLKSKGSSDLLVRLARTAPYYKRNRPHVCSFWV 168
R + +Y Q+ L+ D ++ S+G + VR +R +W
Sbjct: 109 RRNMAVDYSSQDFRQSLAAIDQASRDGAI-SRGEDGVRVRQIGDTTIMTEHRDPYSFYWQ 167
Query: 169 KGECRRGEECPYRHEKPTD 187
+ RR E P R PTD
Sbjct: 168 LDQARREAESPPRRPPPTD 186
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 29.1 bits (62), Expect = 6.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEI 257
LYV N+ +++ +D LR HF +G I
Sbjct: 345 LYVKNIEEDLNDDGLRDHFSSFGTI 369
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 29.1 bits (62), Expect = 6.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 233 LYVGNLPDNVTEDELRGHFYQYGEI 257
LYV N+ +++ +D LR HF +G I
Sbjct: 345 LYVKNIEEDLNDDGLRDHFSSFGTI 369
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 28.7 bits (61), Expect = 7.9
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 227 DKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLV 263
D++ +++VGN+ +V+ED +R F + G + + +V
Sbjct: 14 DRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMV 50
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 28.7 bits (61), Expect = 7.9
Identities = 20/90 (22%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 232 TLYVGNLPDNVTEDELRGHFYQYGEIRCLTLV-------PRAQCAFVQYTSRNAAEHAAE 284
++YVGN+ T +E+ HF+ G + +T+ P+ A+V++T + ++A
Sbjct: 79 SVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKG-FAYVEFTEKEGMQNALA 137
Query: 285 KTFNRLVIFGKRLTIKWGKSQGRQGLTEKN 314
T + ++ G+++ + K + G++ N
Sbjct: 138 MTDS--LLRGRQIKVD-PKRTNKPGMSTTN 164
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 28.7 bits (61), Expect = 7.9
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 228 KTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQC------AFVQYTSRNAAEH 281
K + + + +P E EL G+F Q+G + + + + A+V + ++ AE
Sbjct: 29 KKIYVVKIKRIPFGFFEKELLGYFRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAVAEI 88
Query: 282 AAEKTFNRLVIFGKRL 297
AAE + N ++F +RL
Sbjct: 89 AAE-SMNGYLMFEQRL 103
>AC025723-11|AAN84832.2| 554|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform c protein.
Length = 554
Score = 28.7 bits (61), Expect = 7.9
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 115 EYYIQNLESQLSNSDPTQPTNSLKSKGSSDLLVRLARTAPYYKRNRPHVCSFWVKGECRR 174
+Y Q+ L+ D ++ S+G + VR +R +W + RR
Sbjct: 4 DYSSQDFRQSLAAIDQASRDGAI-SRGEDGVRVRQIGDTTIMTEHRDPYSFYWQLDQARR 62
Query: 175 GEECPYRHEKPTD 187
E P R PTD
Sbjct: 63 EAESPPRRPPPTD 75
>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
protein 4 protein.
Length = 2325
Score = 28.7 bits (61), Expect = 7.9
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 117 YIQNLESQLSNSDPTQPTNSLKSKGSSDLLVRLARTAPYYKR----NRPHVCSFWVKGEC 172
+ +++E S PTQ +++ K + V + TAP +R N + FW KGE
Sbjct: 842 FSESIEVTTSEGRPTQAPKNVRVKVLNSTAVAIEFTAPEQQRIPGVNLGYKVQFW-KGEP 900
Query: 173 RRGE 176
+GE
Sbjct: 901 EKGE 904
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.135 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,234,431
Number of Sequences: 27539
Number of extensions: 370257
Number of successful extensions: 980
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 907
Number of HSP's gapped (non-prelim): 103
length of query: 409
length of database: 12,573,161
effective HSP length: 83
effective length of query: 326
effective length of database: 10,287,424
effective search space: 3353700224
effective search space used: 3353700224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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