GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002363-TA|BGIBMGA002363-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR000571|Zinc finger, CCCH-type
         (409 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    24   2.0  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   4.7  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   8.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   8.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   8.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   8.2  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 21  PILCQTCLGD-NPYIRMTKEKYG---KECKICS----RPFTVFRWCPGARMRFKKTEICQ 72
           PI    C G  + Y++++  K     + C  C     R  +V  +CP A+   KK     
Sbjct: 47  PIPSYACRGRCSSYLQVSGSKIWQMERSCMCCQESGEREASVSLFCPRAKPGEKKFRKVI 106

Query: 73  TCSKLKNVCQTCLLDLEYGL 92
           T + L+ +C+ C    EY +
Sbjct: 107 TKAPLECMCRPCTSVEEYAI 126


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 8  NTYNRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKE 44
          +T NRQ      FPI C T LG   +  + K  Y  E
Sbjct: 53 DTPNRQKILKDGFPIKCGTFLGSGGFGIVYKALYKGE 89


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 60 GARMRFKKTEICQTCSKLKNVCQT 83
          G R  F   E+  T + + N CQT
Sbjct: 23 GTRPSFVSDEMIATAASVVNACQT 46


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 35  RMTKEKYGKECKICSRP 51
           R  KE Y   C +C +P
Sbjct: 209 RRLKETYSNMCALCEKP 225


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 35  RMTKEKYGKECKICSRP 51
           R  KE Y   C +C +P
Sbjct: 209 RRLKETYSNMCALCEKP 225


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 35  RMTKEKYGKECKICSRP 51
           R  KE Y   C +C +P
Sbjct: 209 RRLKETYSNMCALCEKP 225


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,586
Number of Sequences: 429
Number of extensions: 4334
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 409
length of database: 140,377
effective HSP length: 59
effective length of query: 350
effective length of database: 115,066
effective search space: 40273100
effective search space used: 40273100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)