GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002362-TA|BGIBMGA002362-PA|IPR000618|Insect cuticle
protein
         (173 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    26   2.7  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   8.1  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    25   8.1  

>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 140 IAKVAYAAPVAKIAYNSAPLTQVTFSSPAISY 171
           +  VAY  PV  I   ++PLT  +F++  + Y
Sbjct: 371 LPSVAYTPPVMHIPTTNSPLTPQSFTNSFLGY 402


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 27  EAPAHYDFEYSVHDQQSGDIKQQKESRAGDAVQGFYSLVQPDGVHRIVEYTSDKVNGFNA 86
           E P  Y+FE  +  +Q+  +    +S+   + Q ++S   P    R      + +N    
Sbjct: 390 ELPVDYEFELKLRKKQTTKVSGTPKSKHAGSTQEWHSHTTP----RSTSKHENNLNNITN 445

Query: 87  NVRYEGHPVAQPAKIAYAAP 106
           + + E H  +Q     +AAP
Sbjct: 446 SAKNE-HIRSQRQHKTHAAP 464


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 47  KQQKESRAGDAVQGFYSLVQPDG 69
           K  ++S  GD++ G YS+++  G
Sbjct: 395 KAIRDSMVGDSIHGLYSILETSG 417


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.129    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 608,310
Number of Sequences: 5004
Number of extensions: 19388
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 3
length of query: 173
length of database: 2,362,478
effective HSP length: 68
effective length of query: 105
effective length of database: 2,022,206
effective search space: 212331630
effective search space used: 212331630
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)