GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002362-TA|BGIBMGA002362-PA|IPR000618|Insect cuticle
protein
         (173 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036533-1|AAH36533.1|  748|Homo sapiens junctophilin 3 protein.       32   1.2  
AB042640-1|BAB11987.1|  620|Homo sapiens junctophilin type3 prot...    32   1.2  
AB042636-1|BAB11983.1|  748|Homo sapiens junctophilin type3 prot...    32   1.2  

>BC036533-1|AAH36533.1|  748|Homo sapiens junctophilin 3 protein.
          Length = 748

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 30  AHYDFEYSVHDQQSGDIKQQKESRAGDAVQGFYSLVQPDG 69
           AH+  + SV +++ GDI+   E RAGD  +  +   Q  G
Sbjct: 499 AHFSRQVSVDEERGGDIQMLLEGRAGDCARSSWGEEQAGG 538


>AB042640-1|BAB11987.1|  620|Homo sapiens junctophilin type3
           protein.
          Length = 620

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 30  AHYDFEYSVHDQQSGDIKQQKESRAGDAVQGFYSLVQPDG 69
           AH+  + SV +++ GDI+   E RAGD  +  +   Q  G
Sbjct: 371 AHFSRQVSVDEERGGDIQMLLEGRAGDCARSSWGEEQAGG 410


>AB042636-1|BAB11983.1|  748|Homo sapiens junctophilin type3
           protein.
          Length = 748

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 30  AHYDFEYSVHDQQSGDIKQQKESRAGDAVQGFYSLVQPDG 69
           AH+  + SV +++ GDI+   E RAGD  +  +   Q  G
Sbjct: 499 AHFSRQVSVDEERGGDIQMLLEGRAGDCARSSWGEEQAGG 538


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.316    0.129    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,773,548
Number of Sequences: 224733
Number of extensions: 625392
Number of successful extensions: 1676
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1673
Number of HSP's gapped (non-prelim): 3
length of query: 173
length of database: 73,234,838
effective HSP length: 85
effective length of query: 88
effective length of database: 54,132,533
effective search space: 4763662904
effective search space used: 4763662904
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)