GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002362-TA|BGIBMGA002362-PA|IPR000618|Insect cuticle
protein
         (173 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical protein
            C23F12.1a protein.
          Length = 2329

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 29   PAHYDFEYSVHDQQSGDIKQQKESRAGDAVQGFYSLVQPDGVHRIVEYTSDKVNGFNANV 88
            P+    E S HDQ    +   K+S  G        +V+ +  H  + +T  +V     +V
Sbjct: 1167 PSSLVVEVSGHDQLEIRVLDSKKSEIGT------DIVEIEPGHMQINFTPAQVGDHEIDV 1220

Query: 89   RYEGHPV 95
            RY G PV
Sbjct: 1221 RYGGVPV 1227


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
            C23F12.1b protein.
          Length = 2747

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 29   PAHYDFEYSVHDQQSGDIKQQKESRAGDAVQGFYSLVQPDGVHRIVEYTSDKVNGFNANV 88
            P+    E S HDQ    +   K+S  G        +V+ +  H  + +T  +V     +V
Sbjct: 1167 PSSLVVEVSGHDQLEIRVLDSKKSEIGT------DIVEIEPGHMQINFTPAQVGDHEIDV 1220

Query: 89   RYEGHPV 95
            RY G PV
Sbjct: 1221 RYGGVPV 1227


>U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical
           protein W03B1.2 protein.
          Length = 814

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 23  YAEHEAPAHYDFEYSVHDQQSGDIKQQKESRAGDAVQGFYSLVQPDGVHRI 73
           Y+       YDF  S+  +    +K+Q E  A   V   Y L +PDG  ++
Sbjct: 162 YSMRNTQEKYDFGQSLKQETYEALKEQLEKLACKIVNNLY-LSEPDGPFQV 211


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.129    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,275,624
Number of Sequences: 27539
Number of extensions: 108853
Number of successful extensions: 232
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 3
length of query: 173
length of database: 12,573,161
effective HSP length: 77
effective length of query: 96
effective length of database: 10,452,658
effective search space: 1003455168
effective search space used: 1003455168
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)