GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002361-TA|BGIBMGA002361-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like, IPR011044|Quinoprotein amine dehydrogenase, beta
chain-like
         (482 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    24   2.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   2.1  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   4.8  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 79  QGKLVHTLEGHAMSIRSLCFSPDSQLL 105
           +G +VH LE H M I+    S  S++L
Sbjct: 8   EGAMVHHLEPHRMQIKPQSPSSSSRIL 34


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 79  QGKLVHTLEGHAMSIRSLCFSPDSQLL 105
           +G +VH LE H M I+    S  S++L
Sbjct: 8   EGAMVHHLEPHRMQIKPQSPSSSSRIL 34


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 315 RGKFIMSVAWSPDGRYIASGAEGGSVYLFDVSQGKMLH 352
           R KF  SV WSP G   A       +Y+   S  K  H
Sbjct: 78  RFKFSSSVGWSPAGHEEAQSPH--RIYMHPESPSKGSH 113


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,208
Number of Sequences: 317
Number of extensions: 4257
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 5
length of query: 482
length of database: 114,650
effective HSP length: 59
effective length of query: 423
effective length of database: 95,947
effective search space: 40585581
effective search space used: 40585581
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)