GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002361-TA|BGIBMGA002361-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like, IPR011044|Quinoprotein amine dehydrogenase, beta
chain-like
         (482 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   4.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   5.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   9.9  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 91  MSIRSLCFSPDSQLLLTGSDDGHMKLYDVVHANLAGTLSGHASWVLSVAFSPD 143
           +S RS   S D +      ++ H   +  +  +L GTL+ + S +L    SPD
Sbjct: 100 LSNRSSTSSNDPKNQYKNQNNNHYTSHQHLRTHLRGTLTVNVSVLLLSLASPD 152


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 314 TRGKFIMSVAWSPDGR 329
           TRG   +S++W  DGR
Sbjct: 635 TRGDLPLSISWLKDGR 650


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query: 50  FTLSVAYSPDGKY 62
           FT S+A SPDG++
Sbjct: 476 FTYSLALSPDGQF 488


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,321
Number of Sequences: 429
Number of extensions: 4866
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 482
length of database: 140,377
effective HSP length: 60
effective length of query: 422
effective length of database: 114,637
effective search space: 48376814
effective search space used: 48376814
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)