GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002360-TA|BGIBMGA002360-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (113 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   4.0  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    19   9.1  

>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 33  KPKEGENDTENAEELQDSQKESAENYIITGGLDDYIKVWQL 73
           K  E ++   +A+   + +  SA +YI      DY  V +L
Sbjct: 131 KSSESDSGASSADPDDELRSSSAFSYIKPSSERDYFSVKKL 171


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 19.4 bits (38), Expect = 9.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 76  GKLEIKHQLEGHSLGVISVAVSPDGKSMC 104
           G ++IKH++      V+ V   P   S C
Sbjct: 10  GSMDIKHEMIYREDDVLLVKSEPQLHSPC 38


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.131    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,520
Number of Sequences: 317
Number of extensions: 1145
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 113
length of database: 114,650
effective HSP length: 49
effective length of query: 64
effective length of database: 99,117
effective search space:  6343488
effective search space used:  6343488
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.0 bits)
S2: 38 (19.4 bits)