GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002360-TA|BGIBMGA002360-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (113 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   2.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   2.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   2.7  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    20   6.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   6.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   6.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   6.2  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 7/17 (41%), Positives = 14/17 (82%)

Query: 64  LDDYIKVWQLDNGKLEI 80
           +D+  ++W LD+GK++I
Sbjct: 253 VDECDRLWILDSGKVDI 269


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 6/13 (46%), Positives = 11/13 (84%)

Query: 64  LDDYIKVWQLDNG 76
           +D+Y ++W LD+G
Sbjct: 134 IDEYERLWVLDSG 146


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 6/13 (46%), Positives = 11/13 (84%)

Query: 64  LDDYIKVWQLDNG 76
           +D++ ++W LDNG
Sbjct: 130 IDEWDRLWVLDNG 142


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 84  LEGHSLGVISVAVSP 98
           LEGHS+G+      P
Sbjct: 143 LEGHSIGIGDTIADP 157


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 8   YLQLKKEN--AHEDAIWCCTWSRIEPEKPK 35
           YL + + N  A +  I  CTWS  + EK K
Sbjct: 371 YLDVIERNSGATDKIIRWCTWSEGDLEKCK 400


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 8   YLQLKKEN--AHEDAIWCCTWSRIEPEKPK 35
           YL + + N  A +  I  CTWS  + EK K
Sbjct: 371 YLDVIERNSGATDKIIRWCTWSEGDLEKCK 400


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 8   YLQLKKEN--AHEDAIWCCTWSRIEPEKPK 35
           YL + + N  A +  I  CTWS  + EK K
Sbjct: 371 YLDVIERNSGATDKIIRWCTWSEGDLEKCK 400


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.131    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,795
Number of Sequences: 429
Number of extensions: 1461
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 113
length of database: 140,377
effective HSP length: 50
effective length of query: 63
effective length of database: 118,927
effective search space:  7492401
effective search space used:  7492401
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)
S2: 39 (19.8 bits)