GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002359-TA|BGIBMGA002359-PA|IPR007273|SCAMP
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    29   2.5  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   4.3  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   4.3  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    28   4.3  
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c...    27   5.7  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   7.5  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    27   9.9  

>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 269 GKSTLSAIIRQVCQVLWRNLKTM--VMSPPTKEMWKQISAQFE 309
           G    +A    V Q LW N      V+  PT+E+  QIS QFE
Sbjct: 93  GSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFE 135


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 9/135 (6%)

Query: 399 TNNENDAYKLPYVIVADEAFGIT----KNLMRPYGGKMLSKEKRIFNYRLSLARSCPSCQ 454
           +N      K P +   D  F ++    KNL   YG   L K  R+ + + SL+ +  S  
Sbjct: 149 SNPSQGTTKCPGIFEEDNFFSVSPKRRKNLFEKYGKTDLGKPARVPSPKKSLSSTIKSPP 208

Query: 455 NVTKRITNCNTPIHKRPDLN-DTVNASSSFTSYDSTAVDASSDMESISGQVTLESIGQLL 513
           +  K  T+    + K P L     N SS+F+   +    + + +       +  SI   L
Sbjct: 209 SRVKLPTSI---LSKSPPLKVPNKNRSSTFSPLRTPTSSSKTFVIVDHSTPSPPSIRTKL 265

Query: 514 DMKLAPGSSFMTHLR 528
           +   AP S+F T  R
Sbjct: 266 E-AFAPNSTFATQKR 279


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 460  ITNCNTPIHKRPDLNDTVNASSSFTSYDSTAVDASSDMESISGQVTLESI 509
            + N +TPI     LN +   +SS     STA+ +SS + S S  +T  S+
Sbjct: 3149 VVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSSIVNS-STPITSSSV 3197



 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 460  ITNCNTPIHKRPDLNDTVNASSSFTSYDSTAVDASSDMESISGQVTLESI 509
            + N +TPI     LN +   +SS     STA+ +SS + S S  +T  S+
Sbjct: 3197 VLNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSSVLNS-STPITSSSV 3245



 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 460  ITNCNTPIHKRPDLNDTVNASSSFTSYDSTAVDASSDMESISGQVTLESI 509
            + N +TPI     LN +   +SS     STA+ +SS + S S  +T  S+
Sbjct: 3065 VLNSSTPITSSTALNTSTPITSSSVLNSSTAITSSSIVNS-STPITSSSV 3113


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 408 LPYVIVADEAFGITKNLMRPYGGKMLS---KEKRIFNYRLSLARSCPSCQNVTKRITNC- 463
           +PY  V +  F I +N+      +  +   KE +  N+R+ +  +   C+ +  + T+  
Sbjct: 79  IPYHSVENLNFNIRQNISTTLNLEKTNDSIKETKNENFRMDVLETY-KCKQLNHQTTHLP 137

Query: 464 -NTPIHKRPDLNDTVNASSSFTSYDSTAVDASSDMESISGQV 504
            NT + KR   ND ++   +      +A+  +SD +  S  +
Sbjct: 138 TNTVLKKRSLFNDAISIVPNKKKQLVSAISTNSDSQGASSNI 179


>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 315

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/32 (43%), Positives = 15/32 (46%)

Query: 311 KAYFPNCIGALDGKHVRLIQPPESGSMYYNYK 342
           KA  PN  G L G  V    P E G  Y+ YK
Sbjct: 179 KAQSPNEEGQLQGDIVSFSAPREKGGHYWGYK 210


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 249 GSW-YLASGCSLAELQYGYKIGKSTLSAIIRQVCQVLWRNLKTMVMSPPTKE 299
           G W +L + C    +++G++I   +LS+++ ++   + R LK  +  P T +
Sbjct: 659 GEWDFLLAVCP--HIEHGFQIMSKSLSSLVGEILTNINRYLKDQLQGPDTDD 708


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 517 LAPGSSFMTH---LRSSLRKDITEMVSQEVNRAVEGLRVDFWVHRI 559
           +A G S++T    LRS +R +I + +   +N+  EGL    W+ ++
Sbjct: 568 VADGKSYVTSDDLLRSQVRPNIVKFLECNMNKHSEGLDYLTWIKQL 613


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,288
Number of Sequences: 5004
Number of extensions: 90636
Number of successful extensions: 260
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 15
length of query: 606
length of database: 2,362,478
effective HSP length: 77
effective length of query: 529
effective length of database: 1,977,170
effective search space: 1045922930
effective search space used: 1045922930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)