Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002359-TA|BGIBMGA002359-PA|IPR007273|SCAMP
(606 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81554-5|CAB04511.1| 231|Caenorhabditis elegans Hypothetical pr... 127 3e-29
AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory car... 111 1e-24
AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synapt... 111 1e-24
AF040643-12|AAB94964.2| 658|Caenorhabditis elegans Hypothetical... 77 4e-14
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 33 0.77
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 33 0.77
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 33 0.77
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 33 0.77
U42831-1|AAA83513.2| 614|Caenorhabditis elegans Hypothetical pr... 32 1.0
AF016672-3|AAT92072.1| 394|Caenorhabditis elegans Aldehyde dehy... 32 1.0
AF016672-2|AAO38633.1| 512|Caenorhabditis elegans Aldehyde dehy... 32 1.0
AF016672-1|AAB66116.3| 563|Caenorhabditis elegans Aldehyde dehy... 32 1.0
Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical pr... 31 2.3
Z81467-5|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical pr... 31 2.3
U41510-6|AAK39382.1| 454|Caenorhabditis elegans Hypothetical pr... 30 4.1
Z36753-13|CAA85331.1| 598|Caenorhabditis elegans Hypothetical p... 29 9.5
U80955-5|AAG01559.2| 573|Caenorhabditis elegans Ferm domain (pr... 29 9.5
U80955-4|ABB51180.1| 589|Caenorhabditis elegans Ferm domain (pr... 29 9.5
>Z81554-5|CAB04511.1| 231|Caenorhabditis elegans Hypothetical
protein F57G4.9 protein.
Length = 231
Score = 127 bits (306), Expect = 3e-29
Identities = 64/157 (40%), Positives = 98/157 (62%), Gaps = 6/157 (3%)
Query: 292 VMSPPTKEMWKQISAQFENKAYFPNCIGALDGKHVRLIQPPESGSMYYNYKHFFSLVLMA 351
+ +P + E W+++ F K + C+G+LDGKH+R+ PP SGS+++NYKHFFS VL+
Sbjct: 4 IETPKSAEEWRKVERTFAKK-HILRCLGSLDGKHIRIKAPPHSGSLFFNYKHFFSFVLLV 62
Query: 352 LCDANYCFIWVDVGAYGKDSDSGVFKETSLFKKLLDNLLSIPEPRSITNNENDAYKLPYV 411
+ DA+ IWVDVG+ G ++D+ +F ++ L K +LD ++P P T D P+V
Sbjct: 63 VVDADGRVIWVDVGSPGSNNDASIFSDSKL-KTILDEEANLPPP---TFWSRDFVVKPFV 118
Query: 412 IVADEAFGITKNLMRPYGGKMLSKEKRIFNYRLSLAR 448
I AD F IT +M YGG L+ +++ N +LS AR
Sbjct: 119 I-ADGIFKITPRMMTLYGGNGLNISQKVLNKKLSRAR 154
>AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory
carrier membrane protein protein.
Length = 335
Score = 111 bits (268), Expect = 1e-24
Identities = 66/243 (27%), Positives = 98/243 (40%), Gaps = 6/243 (2%)
Query: 6 DNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDYNPFDGXXXXXXXXXXXXXXXXXXXX 65
DNPF+DP P + ++ T+ T ED+NPF
Sbjct: 3 DNPFADPFSAPPPPPAAAAAASKPTSGGTIETEDFNPFANRAGGSNAQPTTHQSTGSLGN 62
Query: 66 XXVSPPASSQYTRPAQQASAPPPNFTTADFQXXXXXXXXXXXXXXXXXXXXXXGSAGRHN 125
S + R Q + + +A R +
Sbjct: 63 K--SAGMDDELFRKQQDLERRAQELRMREEELDRRQRSAAGGNNLNTNAQ---NNAPRPH 117
Query: 126 NWPPLPGFCPIQPCFYQDINVDIPLEFQRIVRHLYHLWMFYALVLALNIVGGMXXXXXXX 185
NWPPLP PI+PCFYQDI V+IP++FQ+ V Y++++ Y L L +N++ +
Sbjct: 118 NWPPLPTIIPIEPCFYQDIEVEIPVQFQKTVTFAYYVFLMYVLALVVNVLASLFYMIFAG 177
Query: 186 XXXXXXXXX-XYFVLFTPFSFVCWYRPIYKAFRSDSSXXXXXXXXXXXXXXXXTVVQSIG 244
LF+P SF+ W+RP+YKAFR+DSS T VQ++G
Sbjct: 178 GSIGQLFLACIQLALFSPCSFLFWFRPVYKAFRNDSSFNFMVFFFVLFFHCIFTFVQTLG 237
Query: 245 FSD 247
S+
Sbjct: 238 LSN 240
Score = 33.5 bits (73), Expect = 0.44
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 556 VHRIYRSTGASLAKAQAEFTTEILRNQHVQ 585
VHR+YR G S+ KA+ EFT ++ + VQ
Sbjct: 283 VHRLYRGAGFSIDKARQEFTNGVMSDAGVQ 312
>AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synaptic
vesicle protein)homolog protein 1 protein.
Length = 335
Score = 111 bits (268), Expect = 1e-24
Identities = 66/243 (27%), Positives = 98/243 (40%), Gaps = 6/243 (2%)
Query: 6 DNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDYNPFDGXXXXXXXXXXXXXXXXXXXX 65
DNPF+DP P + ++ T+ T ED+NPF
Sbjct: 3 DNPFADPFSAPPPPPAAAAAASKPTSGGTIETEDFNPFANRAGGSNAQPTTHQSTGSLGN 62
Query: 66 XXVSPPASSQYTRPAQQASAPPPNFTTADFQXXXXXXXXXXXXXXXXXXXXXXGSAGRHN 125
S + R Q + + +A R +
Sbjct: 63 K--SAGMDDELFRKQQDLERRAQELRMREEELDRRQRSAAGGNNLNTNAQ---NNAPRPH 117
Query: 126 NWPPLPGFCPIQPCFYQDINVDIPLEFQRIVRHLYHLWMFYALVLALNIVGGMXXXXXXX 185
NWPPLP PI+PCFYQDI V+IP++FQ+ V Y++++ Y L L +N++ +
Sbjct: 118 NWPPLPTIIPIEPCFYQDIEVEIPVQFQKTVTFAYYVFLMYVLALVVNVLASLFYMIFAG 177
Query: 186 XXXXXXXXX-XYFVLFTPFSFVCWYRPIYKAFRSDSSXXXXXXXXXXXXXXXXTVVQSIG 244
LF+P SF+ W+RP+YKAFR+DSS T VQ++G
Sbjct: 178 GSIGQLFLACIQLALFSPCSFLFWFRPVYKAFRNDSSFNFMVFFFVLFFHCIFTFVQTLG 237
Query: 245 FSD 247
S+
Sbjct: 238 LSN 240
Score = 33.5 bits (73), Expect = 0.44
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 556 VHRIYRSTGASLAKAQAEFTTEILRNQHVQ 585
VHR+YR G S+ KA+ EFT ++ + VQ
Sbjct: 283 VHRLYRGAGFSIDKARQEFTNGVMSDAGVQ 312
>AF040643-12|AAB94964.2| 658|Caenorhabditis elegans Hypothetical
protein F14D2.9 protein.
Length = 658
Score = 77.0 bits (181), Expect = 4e-14
Identities = 51/160 (31%), Positives = 90/160 (56%), Gaps = 19/160 (11%)
Query: 297 TKEMWKQISAQFENKAYFPNCIGALDGKHVRLIQPPESGSMYYNYKHFFSLVLMALCDAN 356
TK+ +++ + E + P C G +DGKH R PP+SG++ YNYK FFS + + D++
Sbjct: 431 TKKFYEKEDSNGEERR-MP-CYGIVDGKHWRCEHPPKSGALNYNYKGFFSFNSLIVSDSD 488
Query: 357 YCFIWVDVGAYGKDSDSGVFKE---TSLFKKLLDNL--LSIPEPRSITNNENDAYKLPYV 411
Y ++V + G +SD+ +++ L K ++N+ ++P+P + +P
Sbjct: 489 YRILFVQMCKNGLNSDAQLYQNGPLPRLLTKAIENVGYRTLPDPNVL---------MPPF 539
Query: 412 IVADEAFGITKNLMRPYGGKM--LSKEKRI-FNYRLSLAR 448
I+AD FG+ K++M+PY L+ E+ I FN++LS R
Sbjct: 540 ILADNGFGLHKSMMQPYRPTQIGLNPEENISFNFKLSGTR 579
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 32.7 bits (71), Expect = 0.77
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 318 IGALDGKHVRLIQPPESGSMYYNYKHFF---------SLVLMALCDANYCFIWVDVGAYG 368
IG +D V P YY +K FF ++ M+L DA V +
Sbjct: 1290 IGLMDHCMVHSRLAPSLDKFYYRFKEFFEPELMRVLTTVPTMSLADAGGSLDGVQNYMFN 1349
Query: 369 KDSDSGVFKETSLFKKLLDNLLSIPEPRSITNNENDAYK 407
K+ ++K+ L +LL I + + T N+ +A+K
Sbjct: 1350 CPDGFDFEKDMDMYKRYLSHLLDIAQTDTFTLNQRNAFK 1388
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 32.7 bits (71), Expect = 0.77
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 318 IGALDGKHVRLIQPPESGSMYYNYKHFF---------SLVLMALCDANYCFIWVDVGAYG 368
IG +D V P YY +K FF ++ M+L DA V +
Sbjct: 1296 IGLMDHCMVHSRLAPSLDKFYYRFKEFFEPELMRVLTTVPTMSLADAGGSLDGVQNYMFN 1355
Query: 369 KDSDSGVFKETSLFKKLLDNLLSIPEPRSITNNENDAYK 407
K+ ++K+ L +LL I + + T N+ +A+K
Sbjct: 1356 CPDGFDFEKDMDMYKRYLSHLLDIAQTDTFTLNQRNAFK 1394
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 32.7 bits (71), Expect = 0.77
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 318 IGALDGKHVRLIQPPESGSMYYNYKHFF---------SLVLMALCDANYCFIWVDVGAYG 368
IG +D V P YY +K FF ++ M+L DA V +
Sbjct: 1296 IGLMDHCMVHSRLAPSLDKFYYRFKEFFEPELMRVLTTVPTMSLADAGGSLDGVQNYMFN 1355
Query: 369 KDSDSGVFKETSLFKKLLDNLLSIPEPRSITNNENDAYK 407
K+ ++K+ L +LL I + + T N+ +A+K
Sbjct: 1356 CPDGFDFEKDMDMYKRYLSHLLDIAQTDTFTLNQRNAFK 1394
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 32.7 bits (71), Expect = 0.77
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 318 IGALDGKHVRLIQPPESGSMYYNYKHFF---------SLVLMALCDANYCFIWVDVGAYG 368
IG +D V P YY +K FF ++ M+L DA V +
Sbjct: 1296 IGLMDHCMVHSRLAPSLDKFYYRFKEFFEPELMRVLTTVPTMSLADAGGSLDGVQNYMFN 1355
Query: 369 KDSDSGVFKETSLFKKLLDNLLSIPEPRSITNNENDAYK 407
K+ ++K+ L +LL I + + T N+ +A+K
Sbjct: 1356 CPDGFDFEKDMDMYKRYLSHLLDIAQTDTFTLNQRNAFK 1394
>U42831-1|AAA83513.2| 614|Caenorhabditis elegans Hypothetical
protein R11B5.1 protein.
Length = 614
Score = 32.3 bits (70), Expect = 1.0
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 378 ETSLFKKLLDNLLSIPEPRSITNNENDAY----KLPYVIVADEAFGITKNLMRPYGGKML 433
E LFK L +L + EP+ +T + +D KLP + E F + MRPY G+
Sbjct: 502 EEFLFKAAL-GILRMYEPKLLTMDFDDCVEFLTKLPNTLTGAELFRNIEPFMRPYNGESS 560
Query: 434 SKEKR 438
+KR
Sbjct: 561 RSKKR 565
>AF016672-3|AAT92072.1| 394|Caenorhabditis elegans Aldehyde
dehydrogenase protein6, isoform c protein.
Length = 394
Score = 32.3 bits (70), Expect = 1.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 295 PPTKEMWKQISAQFENKAYFPNCIGALDGKHVRLIQP 331
P K +W++++ +N FP IG GK+ + P
Sbjct: 289 PTFKTIWRKVAENLDNYVTFPKLIGECGGKNFHFVHP 325
>AF016672-2|AAO38633.1| 512|Caenorhabditis elegans Aldehyde
dehydrogenase protein6, isoform b protein.
Length = 512
Score = 32.3 bits (70), Expect = 1.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 295 PPTKEMWKQISAQFENKAYFPNCIGALDGKHVRLIQP 331
P K +W++++ +N FP IG GK+ + P
Sbjct: 289 PTFKTIWRKVAENLDNYVTFPKLIGECGGKNFHFVHP 325
>AF016672-1|AAB66116.3| 563|Caenorhabditis elegans Aldehyde
dehydrogenase protein6, isoform a protein.
Length = 563
Score = 32.3 bits (70), Expect = 1.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 295 PPTKEMWKQISAQFENKAYFPNCIGALDGKHVRLIQP 331
P K +W++++ +N FP IG GK+ + P
Sbjct: 289 PTFKTIWRKVAENLDNYVTFPKLIGECGGKNFHFVHP 325
>Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical protein
F26H9.8 protein.
Length = 1377
Score = 31.1 bits (67), Expect = 2.3
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 458 KRITNCNTPIHKRPDLNDTVNASSSFTSYDS--TAVDASSDMESISGQVTLESI 509
K I CN P+ K P LN +T YDS + V S+D+ + S V + +
Sbjct: 1324 KTIDLCNNPLTKEPKLNSAKRIIKEWTEYDSEISKVLNSADINTPSPSVDRDEL 1377
>Z81467-5|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical protein
F26H9.8 protein.
Length = 1377
Score = 31.1 bits (67), Expect = 2.3
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 458 KRITNCNTPIHKRPDLNDTVNASSSFTSYDS--TAVDASSDMESISGQVTLESI 509
K I CN P+ K P LN +T YDS + V S+D+ + S V + +
Sbjct: 1324 KTIDLCNNPLTKEPKLNSAKRIIKEWTEYDSEISKVLNSADINTPSPSVDRDEL 1377
>U41510-6|AAK39382.1| 454|Caenorhabditis elegans Hypothetical
protein ZC449.1 protein.
Length = 454
Score = 30.3 bits (65), Expect = 4.1
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 416 EAFGITKNLMRPYG-GKMLSKEKRIFNYRLSLARSCPSCQNVTKRITNCNTPIHKRPDLN 474
E +GI L P+G GK+L EK I+ + L S CQN I + + KR +
Sbjct: 276 ELYGI---LAEPHGSGKLLENEKVIYAEKFCLPESPFVCQNDEIFILHVQKTLSKRRRI- 331
Query: 475 DTVNASSSFT 484
T A+SS T
Sbjct: 332 -TTKAASSIT 340
>Z36753-13|CAA85331.1| 598|Caenorhabditis elegans Hypothetical
protein T09A5.2a protein.
Length = 598
Score = 29.1 bits (62), Expect = 9.5
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 473 LNDTVNASSSFTSYDSTAVDASSDMESISGQVTLESIGQLL----DMKLAPGSSFMTHLR 528
L D++N S + DA S ESIS E IGQ+ MK P MT +
Sbjct: 526 LEDSLNGDSKTLVIVHLSPDAKSLNESISSVNFAEKIGQVFTKSGTMKREPTRRSMTGIS 585
Query: 529 SSLRKDI 535
S R++I
Sbjct: 586 SGQRREI 592
>U80955-5|AAG01559.2| 573|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 2,
isoform a protein.
Length = 573
Score = 29.1 bits (62), Expect = 9.5
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 464 NTPIHKRPDLNDTVNASSSFTSYDSTAVDASSDMESISGQVTLESIGQLLDMKLAPGSS 522
N P+ PDL VN S+ F S T +SS VT ++G + ++ P SS
Sbjct: 426 NVPLPTSPDLKKPVNNSNPFISDPLTPSSSSSSSSHNLSHVTKITVGTIGNLD-TPSSS 483
>U80955-4|ABB51180.1| 589|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 2,
isoform b protein.
Length = 589
Score = 29.1 bits (62), Expect = 9.5
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 464 NTPIHKRPDLNDTVNASSSFTSYDSTAVDASSDMESISGQVTLESIGQLLDMKLAPGSS 522
N P+ PDL VN S+ F S T +SS VT ++G + ++ P SS
Sbjct: 442 NVPLPTSPDLKKPVNNSNPFISDPLTPSSSSSSSSHNLSHVTKITVGTIGNLD-TPSSS 499
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.134 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,093,919
Number of Sequences: 27539
Number of extensions: 483326
Number of successful extensions: 1201
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1177
Number of HSP's gapped (non-prelim): 27
length of query: 606
length of database: 12,573,161
effective HSP length: 86
effective length of query: 520
effective length of database: 10,204,807
effective search space: 5306499640
effective search space used: 5306499640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
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