GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002359-TA|BGIBMGA002359-PA|IPR007273|SCAMP
         (606 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   4.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   7.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   7.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   9.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   9.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   9.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   9.6  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 9/38 (23%), Positives = 23/38 (60%)

Query: 516 KLAPGSSFMTHLRSSLRKDITEMVSQEVNRAVEGLRVD 553
           + A G   + +  ++L +++  +++  +NR V+G R+D
Sbjct: 186 QFATGQPDLNYRSAALDQEMKNVLTFWMNRGVDGFRID 223


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 279 QVCQVLWRNLKTMVMSPPTKEMWKQISAQF-ENKAYFPNCIGALDG 323
           +VC V   N+    ++ P KE W++ + Q  E   Y  N    L G
Sbjct: 133 KVCSVNDVNMTITELTDPVKEFWERRALQISEGVEYVGNIRWELAG 178


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 379 TSLFKKLLDNLLSIPEPRSITN 400
           +S FKKL+DN ++   P  I N
Sbjct: 320 SSDFKKLIDNWMTYMPPSGIPN 341


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 379 TSLFKKLLDNLLSIPEPRSITN 400
           +S FKKL+DN ++   P  I N
Sbjct: 320 SSDFKKLVDNWMTYMPPSGIPN 341


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 280 VCQVLWRNLKTMVMSPPTKEMWKQISAQFEN 310
           +C     NL   ++  P KE W++ + Q  +
Sbjct: 167 ICSTPIGNLSHALLKDPVKEFWERRTLQISD 197


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 280 VCQVLWRNLKTMVMSPPTKEMWKQISAQFEN 310
           +C     NL   ++  P KE W++ + Q  +
Sbjct: 220 ICSTPIGNLSHALLKDPVKEFWERRTLQISD 250


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 9/44 (20%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 524 MTHLRSSLRKDITEMVSQEVNRAVEGLRVDFWVHRIYRSTGASL 567
           + +  S +R+++  ++   +++ ++G R+D   H ++ S   SL
Sbjct: 201 LNYRNSDVREEMKNIMKFWLDKGIDGFRIDAVPH-LFESANISL 243


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,753
Number of Sequences: 429
Number of extensions: 5811
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 7
length of query: 606
length of database: 140,377
effective HSP length: 62
effective length of query: 544
effective length of database: 113,779
effective search space: 61895776
effective search space used: 61895776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)