GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002358-TA|BGIBMGA002358-PA|undefined
         (54 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    25   0.91 
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    24   2.1  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    23   4.9  
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    23   6.4  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    22   8.5  

>SPBC18E5.10 |||iron sulfur cluster assembly protein
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 0.91
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 6/33 (18%)

Query: 5  REHCAKCQYQFNRVRDVIRQRWTVAKRLAGAKS 37
          R HC K ++ FN +R+V        KRL G+K+
Sbjct: 4  RGHCCKLKHSFNGLRNV------ALKRLVGSKA 30


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 1   MIDDREHCAKCQYQFNRVRDVIRQRWTVAKRL 32
           +I DR  C  C + + R  +++   WT+ ++L
Sbjct: 612 VILDRIWCELCMFSYFREEELLSVIWTLQEKL 643


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 6   EHCAKCQYQFNRVRDVIRQRW 26
           +H A  QY  N  +D++R+R+
Sbjct: 669 DHPAAMQYIMNAAQDILRRRF 689


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 457

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 8/27 (29%), Positives = 18/27 (66%)

Query: 28 VAKRLAGAKSRMLVEKQDPAYFIQRSK 54
          + ++L G + R+ V K+D   FI++++
Sbjct: 17 ILEKLIGIRQRLAVLKRDRTRFIEKNE 43


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 13  YQFNRVRDVIRQRWTVAKRLAGAKSRMLVEKQDPAYFIQRSK 54
           Y  ++ RD     + V+   +  KS  L+     +  IQRSK
Sbjct: 720 YSHSKGRDTRSSSYVVSSETSSLKSSRLILSHANSVRIQRSK 761


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.328    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,654
Number of Sequences: 5004
Number of extensions: 5170
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 5
length of query: 54
length of database: 2,362,478
effective HSP length: 35
effective length of query: 19
effective length of database: 2,187,338
effective search space: 41559422
effective search space used: 41559422
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 45 (22.2 bits)