GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002358-TA|BGIBMGA002358-PA|undefined
         (54 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1810 - 40049677-40049951,40050032-40050112,40050201-400503...    25   9.8  

>01_06_1810 -
          40049677-40049951,40050032-40050112,40050201-40050371,
          40050434-40050497,40050689-40050777,40051244-40051378,
          40051464-40051515
          Length = 288

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 6  EHCAKCQYQFNRVRDVIRQRWTVAKRLAGAKSRMLVE 42
          +HC    +QF  + D+I + +   K    AK R +++
Sbjct: 49 KHCTDIDFQFCDIGDIIVKDFDEGKETLQAKRRRMLQ 85


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.328    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,413,223
Number of Sequences: 37544
Number of extensions: 34429
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 1
length of query: 54
length of database: 14,793,348
effective HSP length: 35
effective length of query: 19
effective length of database: 13,479,308
effective search space: 256106852
effective search space used: 256106852
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 51 (24.6 bits)