GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002358-TA|BGIBMGA002358-PA|undefined
         (54 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006670-5|AAF39912.2|  356|Caenorhabditis elegans Hypothetical ...    28   0.91 
AC006670-4|AAU20843.1|  518|Caenorhabditis elegans Hypothetical ...    28   0.91 
L23646-9|AAM48529.1|  379|Caenorhabditis elegans Hypothetical pr...    26   3.7  
L23646-8|AAM48530.1|  411|Caenorhabditis elegans Hypothetical pr...    26   3.7  
L23646-7|AAA28038.3|  471|Caenorhabditis elegans Hypothetical pr...    26   3.7  
L23646-6|AAU87821.1|  469|Caenorhabditis elegans Hypothetical pr...    26   3.7  

>AC006670-5|AAF39912.2|  356|Caenorhabditis elegans Hypothetical
           protein K07A3.3a protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 5   REHCAKCQYQ-FNRVRDVIR--QRWTVAKRLAGAKSRMLVEKQDP 46
           +++ A   YQ + RV + +R  ++W +++ +A AK R  + KQ+P
Sbjct: 119 KKYLAVAVYQHYRRVENNLRVTEQWMLSEAVAAAKERKKMRKQNP 163


>AC006670-4|AAU20843.1|  518|Caenorhabditis elegans Hypothetical
           protein K07A3.3b protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 5   REHCAKCQYQ-FNRVRDVIR--QRWTVAKRLAGAKSRMLVEKQDP 46
           +++ A   YQ + RV + +R  ++W +++ +A AK R  + KQ+P
Sbjct: 119 KKYLAVAVYQHYRRVENNLRVTEQWMLSEAVAAAKERKKMRKQNP 163


>L23646-9|AAM48529.1|  379|Caenorhabditis elegans Hypothetical
           protein F44E2.7b protein.
          Length = 379

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 4   DREHCAKCQYQFNRVRD 20
           +R+HC +C  +F R RD
Sbjct: 250 ERDHCQRCVIKFPRARD 266


>L23646-8|AAM48530.1|  411|Caenorhabditis elegans Hypothetical
           protein F44E2.7c protein.
          Length = 411

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 4   DREHCAKCQYQFNRVRD 20
           +R+HC +C  +F R RD
Sbjct: 282 ERDHCQRCVIKFPRARD 298


>L23646-7|AAA28038.3|  471|Caenorhabditis elegans Hypothetical
           protein F44E2.7a protein.
          Length = 471

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 4   DREHCAKCQYQFNRVRD 20
           +R+HC +C  +F R RD
Sbjct: 342 ERDHCQRCVIKFPRARD 358


>L23646-6|AAU87821.1|  469|Caenorhabditis elegans Hypothetical
           protein F44E2.7d protein.
          Length = 469

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 4   DREHCAKCQYQFNRVRD 20
           +R+HC +C  +F R RD
Sbjct: 340 ERDHCQRCVIKFPRARD 356


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.328    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,246,050
Number of Sequences: 27539
Number of extensions: 31231
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 6
length of query: 54
length of database: 12,573,161
effective HSP length: 35
effective length of query: 19
effective length of database: 11,609,296
effective search space: 220576624
effective search space used: 220576624
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 51 (24.6 bits)